G55605


Basic Information

Item Value
gene id G55605
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 30759802 ~ 30760952 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU74971
AGTACTGTGCAAAAATCAGAGACCTTTTTTATTAACCCTTTGcagatttaaataaagttttcgGCACATTTAactttatctttaataaaacttttatttctaTCAGGAGACTCTCATTGAGTTCTTCTGCATGAATCTAAAAGACCTTTTTTCACACATCCTACCTAAGTTCCAAGACatacatctgttaaacATGGTCGTGGGAGTGTTCTTAAATCTGCAAGAAGATTTTTCATACCTCCTGCCCAAGATCCAAATTATACAAATCTatatgttaaacatggtggtgggggtaTTCTAAAATCTGCAGAAAGAATTTTCCACACCTTCTGCCCACAATCCAAACTACCGGTGTACCAGTCCATCTGTTAAATGTAACGGCGGGGTGTTTTTTGCACACTCCTTGTTCACAATCTAAAACATACCAAcctcatctgttaaacatggtggtgggagtgttCTAAAATCTGCAATGGGATTTCCGCACAATTTCAAAGTTCACTTTTAGAAGACGAAGCGTCTTTGTCAGCCTATTGTTCTGAGAATCTCAGCAGCTTCAGAAGTTTGACAGTCTCTGTAGAGCATTATTAACAGCTTCACATCCTTCAGACATCAGACCCACAGCAGAGGTAAAGGATGGACTCAAATGTTTGTGGATGTTTTTGGATCTAGAGCAAATGGAGCTGGAATTTCTTCCATCTCTCTGAAAAAATGAAAGCCTTTACGTCTTGTTTACCTGAAAGGAGGTCTACCAGGTCTTGCACACCAACAGATTATCTTCTATTTAATATCCTGTGGCTGTTTAGACTGGAAAGTTAATAAATGTTGTGTGGTCTCTGACTCTTGCACTCTAGCATTgcactgtatattattttatcccAGATTACTGACAGAATGCTTTATAAACTGAAGATAATAAATATTCTATGAAATCAGATCACCTTCAAATACATACAGATACATCAAGTATATGAAAATCAACCCCAAACCTGATTACAAAAGGCCTTATTTAGGCACACCGAACCCCAAAGCACCTCAAGACTACATACAACATCACCTGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74971 True 1062 lncRNA 0.38 2 30759802 30760952

Neighbor

gene id symbol gene type direction distance location
LOC103026612 LOC108442518 coding upstream 9886 30659726 ~ 30749916 (+)
LOC103026908 NA coding upstream 134420 30614316 ~ 30625382 (+)
LOC103040742 NA coding upstream 410181 30340579 ~ 30349621 (+)
LOC103040008 NA coding upstream 486681 30253550 ~ 30273121 (+)
LOC103041750 NA coding upstream 557596 30176593 ~ 30202206 (+)
slc15a4 slc15a4,LOC107659270 coding downstream 86955 30847907 ~ 30939711 (+)
golga1 golga1 coding downstream 934666 31695618 ~ 31728020 (+)
pop5 pop5 coding downstream 1066465 31827417 ~ 31830620 (+)
rnf10 rnf10 coding downstream 1070402 31831354 ~ 31843104 (+)
mak16 mak16 coding downstream 1096474 31857426 ~ 31863709 (+)
G55591 NA non-coding upstream 123604 30635584 ~ 30636198 (+)
G55537 NA non-coding upstream 158364 30598612 ~ 30601438 (+)
G55533 NA non-coding upstream 229528 30529865 ~ 30530274 (+)
G55525 NA non-coding upstream 265127 30482911 ~ 30494675 (+)
G55507 NA non-coding upstream 329680 30426571 ~ 30430122 (+)
G55606 NA non-coding downstream 16963 30777915 ~ 30843345 (+)
G55698 NA non-coding downstream 707762 31468714 ~ 31469001 (+)
LOC111192664 NA non-coding downstream 714725 31475677 ~ 31477328 (+)
LOC111192665 NA non-coding downstream 716619 31477571 ~ 31486156 (+)
LOC111192667 NA non-coding downstream 758138 31519090 ~ 31548693 (+)
G55502 NA other upstream 134756 30347016 ~ 30625046 (+)
G55532 cgnl1 other upstream 209741 30528862 ~ 30550061 (+)
G55218 NA other upstream 2004985 28754030 ~ 28754817 (+)
asphd2 asphd2,LOC107687974,LOC107703165 other upstream 2102984 28646064 ~ 28656818 (+)
ipo11 ipo11 other upstream 2821413 27814215 ~ 27938389 (+)
G55831 LOC107691557,LOC108411168 other downstream 1159868 31920820 ~ 31924095 (+)
G55844 adam9,LOC107591921,LOC107702867,LOC107722987 other downstream 1213729 31974681 ~ 31977419 (+)
LOC103024127 kcnip3a,LOC108440810,LOC107753121,LOC107687962,LOC107684506,LOC107566017,LOC108264878,LOC101482209,LOC107553838 other downstream 1298457 32059409 ~ 32150570 (+)
slc23a2 slc23a2,LOC108440813,LOC108265605,LOC107684505,LOC107753122,LOC100702287 other downstream 1422125 32183077 ~ 32217411 (+)
G56160 NA other downstream 2597262 33358214 ~ 33366012 (+)

Expression


Co-expression Network