G55606


Basic Information

Item Value
gene id G55606
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 30777915 ~ 30843345 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU74972
CTCTAAGATAGCGGCGGACATTCCTTCAGAAATAGAGGAATTGACCATGGCGAAGGATTTTTGCATTGCAGCATGAAGTTCTTCCTGATTCCTCTCTGCAGCCAGAAATACACCAGCAgatCTTTTCACACACTCGTCCACTTCTGCACTGAACACGGGGTCAACCTTTGGGCCGACAATAATGAGGATCACCAGGGGGTTCTGAGCGTGCCATTCTGAGAAAGCATTCAGGAGGTAGAGAGGATCCTTCACCCTTCTGAGTCCACACACCAGCATAAACACGTGCAGATCTTCTGCTCGAGTtgcacacacacCTGCACTGTGTAAAAAATCACTCCAGCTGAAGTGTGAGCTCGCTCTGGTCTCGATTCCTTGAGCTTGCACAATCATCTCACAGCTCCCGCACTCCAGCTCAgcctctgctttctctttcagcTCAGCACTGAATGCCACAGcaaacCTGGCCCGCCTCAGAACATCCTCCATCACCCCTCGCTTCCCTGCGTCCTTCACATCCTCATTAACGTCCGTCCCTCCAAACACCACCCCGAACGGCACTCCGACATCTAGAAGCAGCCTGCCTCCTTTAAAGATATGAATGGCCAGAGCTCCTTCAAATGGCCCGTCTTGGTTCATGAGCTGTGCCACTTCAGAGGCTGATTTGAAGTCGGCCACATCCCGAAGCACGCACGTGTGCCCTGCACTCTCAATGTGATCcCTTATTCTTTCTGCAGTGGTGCAGTTCCCAGTTTTGGGGCTGAGACAGGCTAAAAACAGCAGCCGCATgcctgctccacagctcagctcCGCGCTGAGGATACTCCTCtcagttcagtggtcagtgCTTAGAAGGGTTAACTCTGCCTAATTAGCCCTCTCTGACCTGAAACAGCCACTGCTGCTCCAGACACGTAGGTAACTAGCTTAGCTTTTACAACAGGTCCGTCTGCCATTACAGTCCCCGGGAAACACGTGGCTGTTAGGTAGCAGTGTCAGAGTGGACACAGGTACAGCAGACGCCCCACCACGTTAGAAAAGAAAGGGTTAATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU74972 True 1050 lncRNA 0.52 10 30777915 30843345

Neighbor

gene id symbol gene type direction distance location
LOC103026612 LOC108442518 coding upstream 27999 30659726 ~ 30749916 (+)
LOC103026908 NA coding upstream 152533 30614316 ~ 30625382 (+)
LOC103040742 NA coding upstream 428294 30340579 ~ 30349621 (+)
LOC103040008 NA coding upstream 504794 30253550 ~ 30273121 (+)
LOC103041750 NA coding upstream 575709 30176593 ~ 30202206 (+)
slc15a4 slc15a4,LOC107659270 coding downstream 4562 30847907 ~ 30939711 (+)
golga1 golga1 coding downstream 852273 31695618 ~ 31728020 (+)
pop5 pop5 coding downstream 984072 31827417 ~ 31830620 (+)
rnf10 rnf10 coding downstream 988009 31831354 ~ 31843104 (+)
mak16 mak16 coding downstream 1014081 31857426 ~ 31863709 (+)
G55605 NA non-coding upstream 16963 30759802 ~ 30760952 (+)
G55591 NA non-coding upstream 141717 30635584 ~ 30636198 (+)
G55537 NA non-coding upstream 176477 30598612 ~ 30601438 (+)
G55533 NA non-coding upstream 247641 30529865 ~ 30530274 (+)
G55525 NA non-coding upstream 283240 30482911 ~ 30494675 (+)
G55698 NA non-coding downstream 625369 31468714 ~ 31469001 (+)
LOC111192664 NA non-coding downstream 632332 31475677 ~ 31477328 (+)
LOC111192665 NA non-coding downstream 634226 31477571 ~ 31486156 (+)
LOC111192667 NA non-coding downstream 675745 31519090 ~ 31548693 (+)
LOC111192731 NA non-coding downstream 717990 31561335 ~ 31566754 (+)
G55502 NA other upstream 152869 30347016 ~ 30625046 (+)
G55532 cgnl1 other upstream 227854 30528862 ~ 30550061 (+)
G55218 NA other upstream 2023098 28754030 ~ 28754817 (+)
asphd2 asphd2,LOC107687974,LOC107703165 other upstream 2121097 28646064 ~ 28656818 (+)
ipo11 ipo11 other upstream 2839526 27814215 ~ 27938389 (+)
G55831 LOC107691557,LOC108411168 other downstream 1077475 31920820 ~ 31924095 (+)
G55844 adam9,LOC107591921,LOC107702867,LOC107722987 other downstream 1131336 31974681 ~ 31977419 (+)
LOC103024127 kcnip3a,LOC108440810,LOC107753121,LOC107687962,LOC107684506,LOC107566017,LOC108264878,LOC101482209,LOC107553838 other downstream 1216064 32059409 ~ 32150570 (+)
slc23a2 slc23a2,LOC108440813,LOC108265605,LOC107684505,LOC107753122,LOC100702287 other downstream 1339732 32183077 ~ 32217411 (+)
G56160 NA other downstream 2514869 33358214 ~ 33366012 (+)

Expression


Co-expression Network