G55770


Basic Information

Item Value
gene id G55770
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 31728742 ~ 31730248 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU75187
atagtaatgcaGTAACTGACAGTGAAACCAATTTGACAATAATAAAGAATTAATAATGTTGCTAACATTGCctattaatgatattttagTCATGCTATTTGGTGACTATGGTATAACTTCACATTCCTTAGTTGTTAGCATGATTACTCGAGCTGTGTCTGTTGAAATCCTGAAGAAAAAGGCTGCTAATGTTAAGATGTTAAGAAATACTCTCATTAATTTGCTGTTAGGATAAGCTGTTTCTATTAACACCACAAATGAAaaagctaatgttgctaacaacgAATGAACGACAATGCTATTTGGTGACTCCTCACATGCCTTTgttgttagcatgttagcatgttatACATTTTGACCAGGCTGTATAATATTAAACCAAGAAGGAAAaagctaacattgctaacagTGAAGAAAAGTTAACAGTAACCAATTTAACCTTGAATGGTACTACAGTCTTGCTAAATGGTGGCTGTTTTTCAGCCTTTTGTTGTTAGCAtgttaaaatggctaggctaaatatttaaaaccttCAAAATGTTACTAATACAATTAATGTAGTTGGTGGCTCTCCATTCATTATTTCCTAGAAAGCAcatttggTAGAGCTGTTTctattaaaacctttaaaatggCTAGTGTTGCTAATACAGTTATGCTAATTGGTGGCTCTCCCTTTATTATTAGACAGTAAGTACATCTGGTCAAGCTGTTTGTATTAAGACCTTAAAAATGGCTAATGTTTTAAACAATGGATGAAATTCGGTATCCACAGATTTACCCTGGTCATACAGGCATGCTATCTGGTGACCACTTGCGTCCCTTTGTAAGGTTAGCTTGTTTGAATGTTGGGTCATGCTGTAAATGAAAGCCAGCAGTAACTAATCTGCCCACTAACTGTAAGGCAGTCATACTTATTGGTTACTAATTGATGGCTACTTGCATTCCTTTATTGTTAGCCATATTAGCATTGAAGAATAGATTATAGCAGCTGGGAGTGAAGTTTGCATTTCAGTATTCAGTTTGATCACGTTACGActgctctttctcttcttcccaAATGTTCTTTCCGCATCAAATGgaattatttacagtttttgtttCACAATCTTCCAATCTTCGTTATCTTCCAGTTCAGAGCGTTTTCCGAACTGCTCAGAAGTCTGGTTCATTCCACTGTGTACCGCCTGATCAGACGTGAGTAGCCTTCCCATCTGAGGGAGACTGGTGTGTCCCATTAGCTTGAGCTGGCCCAAGGAATCCATGAACTTAACAATATGCCCTTTTGCAGATAAATcctattttttttgtcctatctgtctctttctggtTTGCGATACTGTAGCAATCACAGCAAACGCAGCAATCAAACAGAATCCTACAGTGTCCAAGGCTTCGTTCCGACACCACTAACATGTTTTGATTTGTCTTTGTGGTTTGTCAACAATATCAAGACTTGAATAAATCATATTTGATTTTGCTGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75187 True 1485 lncRNA 0.37 2 31728742 31730248

Neighbor

gene id symbol gene type direction distance location
golga1 golga1 coding upstream 722 31695618 ~ 31728020 (+)
slc15a4 slc15a4,LOC107659270 coding upstream 789031 30847907 ~ 30939711 (+)
LOC103026612 LOC108442518 coding upstream 978826 30659726 ~ 30749916 (+)
LOC103026908 NA coding upstream 1103360 30614316 ~ 30625382 (+)
LOC103040742 NA coding upstream 1379121 30340579 ~ 30349621 (+)
pop5 pop5 coding downstream 97169 31827417 ~ 31830620 (+)
rnf10 rnf10 coding downstream 101106 31831354 ~ 31843104 (+)
mak16 mak16 coding downstream 127178 31857426 ~ 31863709 (+)
LOC103046271 NA coding downstream 136906 31867154 ~ 31869244 (+)
LOC103029092 NA coding downstream 174969 31905217 ~ 31909811 (+)
G55771 NA non-coding upstream 4693 31722624 ~ 31724049 (+)
G55751 LOC108411246 non-coding upstream 80237 31648237 ~ 31648505 (+)
G55747 NA non-coding upstream 129171 31595829 ~ 31599571 (+)
G55741 NA non-coding upstream 147700 31575364 ~ 31581042 (+)
LOC111192731 NA non-coding upstream 161988 31561335 ~ 31566754 (+)
G55821 ppiaa,LOC107756846,LOC108411171,LOC107691558,LOC108265559 non-coding downstream 181749 31911997 ~ 31968143 (+)
G55836 NA non-coding downstream 203135 31933383 ~ 31934697 (+)
G55837 NA non-coding downstream 209129 31939377 ~ 31944389 (+)
G55846 adam9,LOC104959316 non-coding downstream 250666 31980914 ~ 31984290 (+)
G55833 NA non-coding downstream 295348 32025596 ~ 32025905 (+)
G55502 NA other upstream 1103696 30347016 ~ 30625046 (+)
G55532 cgnl1 other upstream 1178681 30528862 ~ 30550061 (+)
G55218 NA other upstream 2973925 28754030 ~ 28754817 (+)
asphd2 asphd2,LOC107687974,LOC107703165 other upstream 3071924 28646064 ~ 28656818 (+)
ipo11 ipo11 other upstream 3790353 27814215 ~ 27938389 (+)
G55831 LOC107691557,LOC108411168 other downstream 190572 31920820 ~ 31924095 (+)
G55844 adam9,LOC107591921,LOC107702867,LOC107722987 other downstream 244433 31974681 ~ 31977419 (+)
LOC103024127 kcnip3a,LOC108440810,LOC107753121,LOC107687962,LOC107684506,LOC107566017,LOC108264878,LOC101482209,LOC107553838 other downstream 329161 32059409 ~ 32150570 (+)
slc23a2 slc23a2,LOC108440813,LOC108265605,LOC107684505,LOC107753122,LOC100702287 other downstream 452829 32183077 ~ 32217411 (+)
G56160 NA other downstream 1627966 33358214 ~ 33366012 (+)

Expression


Co-expression Network