LOC103043418 (arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626)


Basic Information

Item Value
gene id LOC103043418
gene name arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 31731464 ~ 31740221 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU75216
ACGGTCGGGtctgtgagtgagagtgtgtgttgtttctCCTGACCGCTCTGCAGCGGCAGCGCGTGGCCATGCTCGCGCTCATGGAAAGATAACGGGTAACGGGGCCGCGCTCTCGGTAACGGACGCTGGTTACAGCGGAAGGGTTTTATTTTTCGTGTGTTTTGCTGAAGCTTTGGCGCGAATACTGATCGCTGGACTCGAGAGAACGGTGGTTAGCTAGTTGCGTTAATGTTAGCTGTAACGTCAAAACATTCGAGCGTTACAACGTCAGAGTGGTGGTAACCGGCAGCTAGGACGTTACAAGGTTTGAACAGCGGGACATCAGAGCGGTTACCGGAACGAACATTTGACCGTCCGTATCCCGGAGCGTTCCAAGGAAGCCCAGCATCGCAGGAATTCCAAACCGTAACCGTCACCGTGTGCGCGTGCACGCGCGTGTGTGTTCGTGCGCGCGCCTCCGGTTCCGATGGCGAGGAACACGCTGCCCTCGCGGTTCCGCGGGCTGGACATCGACGAGTATGACGAGAACCGGTTCGTGGATGAGCAGGACGAGGCGGCCGAGCAGCAGGGGCCGGACGGAGCCGAGGTGGATGCGCTGCTCAGGAGATATCCTTActgacctacacacacacacagcctgaccCAACCCCGGGCAGAACCGGACAGCGAGGCCGCGACTTACATATAGTAAACAAATTACCACAACAGTTGAAGTAATGTAGtatttttacagctctggaaaaaattaagagaccacttcagttactgaatcagtttctctgattttgctatttataggtaagttgtatgtttgagtaaaatgaacattgtcgttttattttataaactactgacatgtctcacaaattccaaaaaaacattgtcatttagagcattgattgagctttcagacctttcaAACAAGTTgctttttaaccacagttttcatgcatcttggcatgttctcctccaccagtcttacacactgcttttggataactttatgccgcttctggtgcaaaaaatcgaATCAGTTCATctgggtttgatggcttgtgataatccgtCTTCCTtatgattataatccagaggtttttaatttggtaaaactcatcaagaatttttttttccaaagctgtatgtacCTGGCAATAGAATAGAGCTGGGCAATAGATCAATATTTTACCATATCATGATACATTTTCTTGTAATGTCGAAAAAATATGCTTTCATAAACATATCACAGATATAtcatcagtgtttaaaaaccacTGACTCAACTGAAATTAATATTCCGTATCAACTGAAATTacgaaatatattgtgatatgatTTTTACAATCTCTTTTTCCCCCCCCTACATTGTGCACCCCTGATTCTTacatcatgcatcttggcctgtATTATCAGCTGGTCTACCTGCATGTATTCTTGTTTTCTTGCTTCTGTGAATATCattactaaagaaaaaaatgaacatagAGGCATTCTGCAGGCTTGGGAAATGACGGTCAGAGGGGTGATGATTCGTCAGTTTCGTGTATTGGAATGTTGACAGATGACACGAGGTTAAAggtcattttgttattttgcttTGGAAGCATAGTCAGGAGGCCAGTTCACCTTTTCTCTCAGTGTGTATGGAGTAGACTGAACTCGCACCTACATAAAACATTGGTGCTGtgccaaaaatgtatattttgtaatgttaaaataacaagaaaagGACAAAAACCTTAACTGTCAttggaagtcaatataaaaaaatatgttaaaggCATttgtattggtccattcatgatAGACTTCTGATTTTAATATACAGTTGCCAGATTAACATTGACACAAATGGAATGTTGGTTTTTGTTGAGCACTTTTTGACcaacattaaacactaaatattttaaagcagcactatgcAAGATTTTGCTTTTAGAGTTAGAAATTAAGTATTCTGCTTTGAACACCACTAAAGGACAAgctttctggacaagctaagagTAAAGAACTATGACTGAAAGTGAAATATGCACATGAATTGAGACTTTAGAGTAGGGGACTAGGGATATTGAACAGAATATTTATAATGTGGTGTTTAGTAtaaatttctttttatatatatatatatatatatatatattttcttgaaACACTAATTAAGCATTATAAACTCCTTAAGACAAACACCCCAAAACTGACATCAATAAATCCATTTTCCGGGTATTTGCTTAtataggagtattttattctttttagtaacgtattgtagagaattgtcttgcgaTATATTGAGTGTGATTATCATTGATTACCAACGTATcgtgataataataaaaaaacattttattgtaaaatgctcTGTGATTCCCACTCCTAATTTATACAGggtttacacaaatatgacttgGTTTATGTAACAATATACAGTTCTCAATATACAGTTCTCATGCTTACTGAAATTCCATAGTGCATCAGCAGCGTTCCAGCCCAAATTAGCAACAGAGGGTCAGTGTACCATTATTGTGATTCTGAACCTTATATTAAATGACACATTCTGTTGGTTTGAAAACCCCAGAGTTAGTACAGGTTCATATaaagtgtgtttgagtgaatTGAACTGGTTTGAGCACACATCTGTTATTAGTTTCTGCTGGAGCTTTACTTGCTGAATCGGGTCAGTGTCTCTGGCGAGGGGTGTGGGTTGTTTCTGGGACACGGGTGCGACTGGAGAGAGCGAGAAGTATGTGAAGCAGTTTTGAGAGATGACAGCTGGTGTTCTCACTGTATTACAGCTGGGTAGAGCATGGCAGAGCAAATTGCACAAGATCAGTCAGACTCTTGGCACTTCTGCTGCTTCTAGCTTCTGAGCTGTTTTGTGTGCGAgtctgttttactgtgtttagcAGTTATGCCTTGGTCTTAGAATCCTTTTAAATGTTTAGGAGTTTTAAAACTTGTGAAACTAGTGGAGAGTGCAGTCAACATTGCTAACTCTGTgctacaaaaacattttaaaggtaCATGGAATACTGTTCATTATAAATTTATCACAGATAAAACTGTGTTGTCTTTTTCCCTATTTTAAACATTCATGGATGCAGTATTTTTCTGCTTTATCTGAGATAAATGCACTGGTACAGACAAATCTGTAGAAATTATCGATTGTCTTTAAATTATATATCAATCAAGATCTGCTCTGCAGATGCCCTGTCAGTGGactaaattaagtctgtttgtAGACGTTTTTCCTTAACCAGATGCACAGGAGAGATGATTACCGCGTTCCACATCGCTCTGAGGAACCCACCCATCAACTCCAAAAACCCAGCTGTGAAAgaGCGAGCCCAGGCTGTGGTGTTGCGGGTGCTGACCTCGTTTAAAAGCAGTGATATTGAGCCAGCAGTGAAGTCACTGGACAGGAACGGGGTGGACCTGCTAATGAAGTACATCTACAGAGGCTTCGAGAAGCCCTCAGACAACAGTAGTGCCATTCTGCTGCAGTGGCACGAAAAGgcGTTTGCTGTTGGCGGTTTGGGGTCGATTGTACGGGTGCTGACAGCAAGAAAGTCTGTTTGAAAAGAGCAGCTGAAGAAGAATAAACAAGAGCGCCACAGGATCAGTCATTATTCTCCTATATACAGACAGCTTCCTTTTTTCACAGCTCTCATCATCTCACCAAACTGCTAGGAATGTTGTCAAAGAGGAGAGGACCACGCAAACCCGGTTTATTTTACTCAGAAACTATCCGTGCGCTCCAGTGGGGAAGTGTGTGCttgaatttaatgtaaattattgATTCGTTTATTTACCTCCTGGAGTTCTAAGAGTTCTAAGAGTGGCCTGAtgcattttttccatttctaaGTGAACGGTTTTAGGTTTTGGTTCAGAAGTTTGAAGAAGAGAAGAATAAGAGAAGGAGCATCAGTGGACGgactgactgaatgactgactgactgactgttcTGCATTCGCCTTGAAAGCCTGTTTCTTGCCATCCAAACTGTGAAAGCTTCAAaaggggtgtgtttgtgtgtgcgcgcTTGTGTGTCTGGCTGCTGGTGCTCCTGGGGGAAAAATAGTTCTTGTTTCTTTAGttccaaaaaaagtgtttcttttgTACAGAAAGGaaaaatgattaatatatatatatataatatagaattGCAGTGGAATTGCGATATCTTTTGAAGT
>XM_007229331.3
GTCGTCATTCCGCTTCCACCACGGTCGGGtctgtgagtgagagtgtgtgttgtttctCCTGACCGCTCTGCAGCGGCAGCGCGTGGCCATGCTCGCGCTCATGGAAAGATAACGGGTAACGGGGCCGCGCTCTCGGTAACGGACGCTGGTTACAGCGGAAGGGTTTTATTTTTCGTGTGTTTTGCTGAAGCTTTGGCGCGAATACTGATCGCTGGACTCGAGAGAACGGTGGTTAGCTAGTTGCGTTAATGTTAGCTGTAACGTCAAAACATTCGAGCGTTACAACGTCAGAGTGGTGGTAACCGGCAGCTAGGACGTTACAAGGTTTGAACAGCGGGACATCAGAGCGGTTACCGGAACGAACATTTGACCGTCCGTATCCCGGAGCGTTCCAAGGAAGCCCAGCATCGCAGGAATTCCAAACCGTAACCGTCACCGTGTGCGCGTGCACGCGCGTGTGTGTTCGTGCGCGCGCCTCCGGTTCCGATGGCGAGGAACACGCTGCCCTCGCGGTTCCGCGGGCTGGACATCGACGAGTATGACGAGAACCGGTTCGTGGATGAGCAGGACGAGGCGGCCGAGCAGCAGGGGCCGGACGGAGCCGAGGTGGATGCGCTGCTCAGGAGAGGAGAGATGATTACCGCGTTCCACATCGCTCTGAGGAACCCACCCATCAACTCCAAAAACCCAGCTGTGAAAgaGCGAGCCCAGGCTGTGGTGTTGCGGGTGCTGACCTCGTTTAAAAGCAGTGATATTGAGCCAGCAGTGAAGTCACTGGACAGGAACGGGGTGGACCTGCTAATGAAGTACATCTACAGAGGCTTCGAGAAGCCCTCAGACAACAGTAGTGCCATTCTGCTGCAGTGGCACGAAAAGgcGTTTGCTGTTGGCGGTTTGGGGTCGATTGTACGGGTGCTGACAGCAAGAAAGTCTGTTTGAAAAGAGCAGCTGAAGAAGAATAAACAAGAGCGCCACAGGATCAGTCATTATTCTCCTATATACAGACAGCTTCCTTTTTTCACAGCTCTCATCATCTCACCAAACTGCTAGGAATGTTGTCAAAGAGGAGAGGACCACGCAAACCCGGTTTATTTTACTCAGAAACTATCCGTGCGCTCCAGTGGGGAAGTGTGTGCttgaatttaatgtaaattattgATTCGTTTATTTACCTCCTGGAGTTCTAAGAGTTCTAAGAGTGGCCTGAtgcattttttccatttctaaGTGAACGGTTTTAGGTTTTGGTTCAGAAGTTTGAAGAAGAGAAGAATAAGAGAAGGAGCATCAGTGGACGgactgactgaatgactgactgactgactgttcTGCATTCGCCTTGAAAGCCTGTTTCTTGCCATCCAAACTGTGAAAGCTTCAAaaggggtgtgtttgtgtgtgcgcgcTTGTGTGTCTGGCTGCTGGTGCTCCTGGGGGAAAAATAGTTCTTGTTTCTTTAGttccaaaaaaagtgtttcttttgTACAGAAAGGaaaaatgattaatatatatatatataatatagaattGCAGTGGAATTGCGATATCTTTTGAAGTGTTGGGTGGGGTCAAATGGGGTTCTTGTGAAGTGCCTGGTGCAATAAAGatcataaatctgtt

Function

symbol description
arpc5la Predicted to enable actin filament binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation and cell migration. Predicted to act upstream of or within regulation of actin filament polymerization. Predicted to be located in actin cytoskeleton. Predicted to be part of Arp2/3 protein complex. Predicted to be active in cytoplasm. Is expressed in notochord. Orthologous to human ARPC5L (actin related protein 2/3 complex subunit 5 like).
arpc5l Predicted to enable actin filament binding activity. Predicted to be involved in Arp2/3 complex-mediated actin nucleation and cell migration. Located in extracellular exosome and focal adhesion.

NR:

description
PREDICTED: actin-related protein 2/3 complex subunit 5-like protein

GO:

id name namespace
GO:0030833 regulation of actin filament polymerization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75216 True 4194 lncRNA 0.41 3 31731527 31740201
XM_007229331.3 False 1620 mRNA 0.50 4 31731464 31740221

Neighbor

gene id symbol gene type direction distance location
LOC103041868 NA coding downstream 120510 31598462 ~ 31610954 (-)
LOC111192668 NA coding downstream 151676 31577353 ~ 31579788 (-)
tmem132c si:dkeyp-14d3.1,LOC107676622,LOC107728438,LOC107659267,LOC107550917,LOC108442515 coding downstream 298813 30967612 ~ 31432651 (-)
glt1d1 NA coding downstream 888164 30762503 ~ 30843300 (-)
LOC103041976 cgnl1 coding downstream 1181535 30528755 ~ 30549929 (-)
LOC103043728 NA coding upstream 3651 31743872 ~ 31759081 (-)
LOC103045458 olfml2a,olm2a,LOC105894692,LOC104951789 coding upstream 52866 31793087 ~ 31825503 (-)
LOC103027824 NA coding upstream 103853 31844074 ~ 31849517 (-)
tti2 NA coding upstream 133395 31873616 ~ 31879260 (-)
slc18a1 slc18a1,LOC107702874,LOC107722997,LOC107591929,LOC106587027 coding upstream 144129 31884350 ~ 31898822 (-)
G55788 NA non-coding downstream 1220 31728783 ~ 31730244 (-)
G55779 golga1,LOC107703180 non-coding downstream 18528 31710305 ~ 31712936 (-)
G55757 NA non-coding downstream 150395 31575369 ~ 31581069 (-)
LOC111192666 NA non-coding downstream 250998 31477576 ~ 31480466 (-)
LOC111192663 NA non-coding downstream 255827 31474911 ~ 31475637 (-)
G55858 NA non-coding upstream 79711 31819932 ~ 31863678 (-)
G55874 NA non-coding upstream 127178 31867399 ~ 31869197 (-)
G55884 LOC108411167 non-coding upstream 168795 31909016 ~ 31910332 (-)
LOC111192671 NA non-coding upstream 379384 32119605 ~ 32122006 (-)
G55939 LOC108440819,LOC108265606 non-coding upstream 480923 32221144 ~ 32239724 (-)
LOC103027498 LOC108411246,LOC106585447 other downstream 40656 31635481 ~ 31690808 (-)
LOC103046862 LOC108410878 other downstream 1797034 29896515 ~ 29934430 (-)
kiaa1671 NA other downstream 1890711 29744028 ~ 29840753 (-)
LOC103031600 lrrc75ba,LOC108414797,LOC107753104,LOC107712478,LOC105891565 other downstream 3130954 28554727 ~ 28600510 (-)
LOC111192657 NA other downstream 3307509 28417733 ~ 28423955 (-)
LOC103021360 LOC108440818,LOC107659619,LOC108265551,LOC107726210,LOC107553829,LOC107684495 other upstream 1031806 32772027 ~ 32802160 (-)
LOC103023237 NA other upstream 1408853 33149074 ~ 33177650 (-)
LOC103038119 LOC108412501,LOC107754395,LOC107671045 other upstream 3350509 35090730 ~ 35108420 (-)
acaa2 acaa2,LOC107671002 other upstream 3545201 35285422 ~ 35293421 (-)
c6h22orf39 NA other upstream 3556120 35296341 ~ 35299750 (-)

Expression


Co-expression Network