G55836


Basic Information

Item Value
gene id G55836
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 31933383 ~ 31934697 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU75282
tATAGACAATCATCAAACTAGAAAAAGCAGCAAAGTCCCATTAGCTTTTGCTGTTTGCCAACACACATTATTCTGGCTATACAGACCTGGAGTGATATACTTTAATAGGTAAAATACCGTAATGGGTACTGTTTAATTCATGTTCCTCTCTTTACCTCATCTTAACATTTATTGCAAATGTCTGAAACTTGAAAAACCAATtgggctaaaaaaaaattacagcccATCACTGGCTGTAATTTAATAATGTGCACCCTAAGTAGAAGTCTCTATGCATTTCCTCCCCCTCACCTCCAGGCGGCGGATGATTTCCCGCAGCGGCAGCGCGCTCTCCGTGCCCCCGATGAAGGTGGTGGTGGGCAGCCGGAACACTTTATCTAGGTCTGACTCATCCAGGCCATAAAAGCCTGAAGGCCAGAGTCAGGCCACAGGACAAGCataggagaggaggagtggggagaggagagaaagagagaggggggaggggAGGAAAAAGGGGCACAGCAGCCGTGAGGATGACAGAAAGCGAGAAAGGAAGACATGAATGGTGAGAAGAAGCAAAAAGATCagaaaatgatacaaaaaatgaCAGAGACAAGCATGAAGATAAacagcaacagagagagagagagagagaaagagagagtgagagagagaaaggaggggGGGAACATAACCAAGTGAGTGGAGGCATGTGatgaatataaacaaacagcatGAGCAAACATTCAAAACATTCCATACAGTGATATGATGGAAGTGATATGGGTTAGaaagatattttattataattaaaaaagaaacattagcAAGCCAAAGCCACAAGTGTTTGAATGGGATATTCAGGGTTAGCATACAAACGGATGGGGGAGAGCAGATTAAAAGAAATggacagaaaaggaaaaaataaagtaaaaaagggGAAAGGAGGGTGGGTTATAAAATAAGCACGACAGTGAGAAGAATTTGGGGAGGTCGAAATATAACaataaggaaagaaaaagaaaaacaagaaggtTAACATTGTTATCATCAGTTCACTTTGATTGGGTTATTAGTGTTAATATGTCTGGCTGAAGCAGCTTAGCGCTGAGGTGTTGATTGTGTGCAATTATATGAAGCGAAAATTCAGCTAAGTTAAAGCTTTATGAACGAGATATAAAATGGTGGTGCTTTTAGTGAActaaattcattatttaaaaaaaaaaatcctgcaaaAGGTTCTTTTAGAAACACCACAGAAAAACAATTTCTGATTACAGTAATACGTTTTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75282 True 1275 lncRNA 0.40 2 31933383 31934697

Neighbor

gene id symbol gene type direction distance location
LOC103029092 NA coding upstream 23572 31905217 ~ 31909811 (+)
LOC103046271 NA coding upstream 64139 31867154 ~ 31869244 (+)
mak16 mak16 coding upstream 69674 31857426 ~ 31863709 (+)
rnf10 rnf10 coding upstream 90279 31831354 ~ 31843104 (+)
pop5 pop5 coding upstream 102763 31827417 ~ 31830620 (+)
nudt18 NA coding downstream 85649 32020346 ~ 32024618 (+)
LOC103022464 rassf2a,LOC108440819,LOC108265606,LOC106580442,LOC107687959 coding downstream 286480 32221177 ~ 32242559 (+)
LOC103025291 NA coding downstream 309863 32244560 ~ 32251009 (+)
rflna fam101a,LOC107687957,LOC107553832,LOC108412767 coding downstream 482982 32417679 ~ 32440011 (+)
LOC111192715 NA coding downstream 778852 32713549 ~ 32729908 (+)
G55770 NA non-coding upstream 203135 31728742 ~ 31730248 (+)
G55771 NA non-coding upstream 209334 31722624 ~ 31724049 (+)
G55751 LOC108411246 non-coding upstream 284878 31648237 ~ 31648505 (+)
G55747 NA non-coding upstream 333812 31595829 ~ 31599571 (+)
G55741 NA non-coding upstream 352341 31575364 ~ 31581042 (+)
G55837 NA non-coding downstream 4680 31939377 ~ 31944389 (+)
G55846 adam9,LOC104959316 non-coding downstream 46217 31980914 ~ 31984290 (+)
G55833 NA non-coding downstream 90899 32025596 ~ 32025905 (+)
G55955 NA non-coding downstream 369604 32304301 ~ 32304773 (+)
G55977 NA non-coding downstream 510036 32444733 ~ 32446803 (+)
G55831 LOC107691557,LOC108411168 other upstream 9288 31920820 ~ 31924095 (+)
G55502 NA other upstream 1308337 30347016 ~ 30625046 (+)
G55532 cgnl1 other upstream 1383322 30528862 ~ 30550061 (+)
G55218 NA other upstream 3178566 28754030 ~ 28754817 (+)
asphd2 asphd2,LOC107687974,LOC107703165 other upstream 3276565 28646064 ~ 28656818 (+)
G55844 adam9,LOC107591921,LOC107702867,LOC107722987 other downstream 39984 31974681 ~ 31977419 (+)
LOC103024127 kcnip3a,LOC108440810,LOC107753121,LOC107687962,LOC107684506,LOC107566017,LOC108264878,LOC101482209,LOC107553838 other downstream 124712 32059409 ~ 32150570 (+)
slc23a2 slc23a2,LOC108440813,LOC108265605,LOC107684505,LOC107753122,LOC100702287 other downstream 248380 32183077 ~ 32217411 (+)
G56160 NA other downstream 1423517 33358214 ~ 33366012 (+)
G56193 aplnra,LOC108441910,LOC107753098,LOC107712463,LOC107550977,LOC107703172,LOC107554406,LOC107687998 other downstream 1469877 33404574 ~ 33406650 (+)

Expression


Co-expression Network