G55846 (adam9,LOC104959316)


Basic Information

Item Value
gene id G55846
gene name adam9,LOC104959316
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 31980914 ~ 31984290 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU75295
ATCTCCCACCAGCATTTAGAATCATCTTCTCGAAATCATCCGCGCTGCAGCTACTGAAGTTCTGAGAGCCaGTTGCCCCTGAGTTCATGATGCAGTTGCCCACGTCACATTTGCATGATCGCCCGTCATCGTGGTTCATCCCCAGGTTGTGCCCCAGCTCATGAGCCACGATAGAGGCGAATGACATCACGTTTTTATTggtgaaCGCATTGATCCCGCCCCCATGACTCCTTGAGCAGGCTGTTCCCACAAATGCCATCCCCGCTGTTCCTCCAAAACCCTTCTTCAGGATAAGCTGAGCACTGTCATGGCGACGCCGGGGCACCAGCTCCTTTTCCCTCCACTGAGTGAACCTGCCGAGGACTTCACCCGCACTGCCCACTGTATTTATGGGGTTCATCACTGACCAGATCTCCAACCCCACTAACACCACACGGATATTCAGTGGAATGTACATACTGTCAACATAGTTGGCGAGCTGCACCATCTCTTCTCTCACAGCCGTATGGTTCCTGTTAGTGTAGTTATATCTTTCCACGTCCACCACGAGCACAAGCTCCACATAATGTGTCTGGTGCATTATTGCCCTCTTTTTCCTGATCAGATGACTGACAGGTAGCCCAGGAGCGATGTCATGGGTGTGGCTGCTCTCTGTGTGTTCTGGTGACGACTGGTGGTCCGTATGATCAGAGTGGGGTGTTCCACACGTCAGAGGTTCTGCCTTTACGTCCTCCAGCCGGTAAACCAGGTGCTCGTTGTGTACAGAGCCCTGCAAAGGCTCAATGCCTAAACTAGTGTTCTCCAAGTGGATCACACCCC

Function

symbol description
adam9 Predicted to enable metalloendopeptidase activity. Predicted to act upstream of or within integrin-mediated signaling pathway and proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in cone-rod dystrophy 9. Orthologous to human ADAM9 (ADAM metallopeptidase domain 9).

NR:

description
PREDICTED: disintegrin and metalloproteinase domain-containing protein 9

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75295 True 819 lncRNA 0.53 7 31980914 31984290

Neighbor

gene id symbol gene type direction distance location
LOC103029092 NA coding upstream 71103 31905217 ~ 31909811 (+)
LOC103046271 NA coding upstream 111670 31867154 ~ 31869244 (+)
mak16 mak16 coding upstream 117205 31857426 ~ 31863709 (+)
rnf10 rnf10 coding upstream 137810 31831354 ~ 31843104 (+)
pop5 pop5 coding upstream 150294 31827417 ~ 31830620 (+)
nudt18 NA coding downstream 36056 32020346 ~ 32024618 (+)
LOC103022464 rassf2a,LOC108440819,LOC108265606,LOC106580442,LOC107687959 coding downstream 236887 32221177 ~ 32242559 (+)
LOC103025291 NA coding downstream 260270 32244560 ~ 32251009 (+)
rflna fam101a,LOC107687957,LOC107553832,LOC108412767 coding downstream 433389 32417679 ~ 32440011 (+)
LOC111192715 NA coding downstream 729259 32713549 ~ 32729908 (+)
G55821 ppiaa,LOC107756846,LOC108411171,LOC107691558,LOC108265559 non-coding upstream 12771 31911997 ~ 31968143 (+)
G55837 NA non-coding upstream 36525 31939377 ~ 31944389 (+)
G55836 NA non-coding upstream 46217 31933383 ~ 31934697 (+)
G55770 NA non-coding upstream 250666 31728742 ~ 31730248 (+)
G55771 NA non-coding upstream 256865 31722624 ~ 31724049 (+)
G55833 NA non-coding downstream 41306 32025596 ~ 32025905 (+)
G55955 NA non-coding downstream 320011 32304301 ~ 32304773 (+)
G55977 NA non-coding downstream 460443 32444733 ~ 32446803 (+)
G55978 NA non-coding downstream 463382 32447672 ~ 32448789 (+)
G55979 ncor2,LOC108412761 non-coding downstream 465208 32449498 ~ 32470210 (+)
G55844 adam9,LOC107591921,LOC107702867,LOC107722987 other upstream 3495 31974681 ~ 31977419 (+)
G55831 LOC107691557,LOC108411168 other upstream 56819 31920820 ~ 31924095 (+)
G55502 NA other upstream 1355868 30347016 ~ 30625046 (+)
G55532 cgnl1 other upstream 1430853 30528862 ~ 30550061 (+)
G55218 NA other upstream 3226097 28754030 ~ 28754817 (+)
LOC103024127 kcnip3a,LOC108440810,LOC107753121,LOC107687962,LOC107684506,LOC107566017,LOC108264878,LOC101482209,LOC107553838 other downstream 75119 32059409 ~ 32150570 (+)
slc23a2 slc23a2,LOC108440813,LOC108265605,LOC107684505,LOC107753122,LOC100702287 other downstream 198787 32183077 ~ 32217411 (+)
G56160 NA other downstream 1373924 33358214 ~ 33366012 (+)
G56193 aplnra,LOC108441910,LOC107753098,LOC107712463,LOC107550977,LOC107703172,LOC107554406,LOC107687998 other downstream 1420284 33404574 ~ 33406650 (+)
izumo1 NA other downstream 1580538 33564828 ~ 33595818 (+)

Expression


Co-expression Network