G55858


Basic Information

Item Value
gene id G55858
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 31819932 ~ 31863678 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU75311
TTGTTTGAGGCACAAACAgtgtagctgtttttttttattactgctgGACTGGTAGGTTTACATTGACCAGTGTTCTTCACAGAACATTTTATGCTTAACAACAGCATAGATACAGAGAAATCTGTCCATTCAGAAAAAACACATGTATCATCTTCTGATTAACAGGTTATAAAAAATATCGGCTGACTGTCAGTGAACTTGGCCTGCATGAATCGCAGATTTCACCCAAAGTCTGTGAACTGCTGGGGTTGCCACAGCATGTTGATCTTGTACATGTCCTGCTTTAGTCTCTATGATGCTTTGTTCTTGGAGGCTGGCTCTGTCTCCTGCTCATACTCAATCTCCACGTAAGCTCGTTTCTTTCTCACTGGTCCCTTGAGTGGGGTCTTTCCTTTAGACTTGGCAGGAGCCTTTTTCTCCTCTTCTATTTCTTCTTCCATCTCTTCTTCtgattcctcctcctcctcttcctcgctCTCTTCGTCTTCATCACCACTGGCCTGGAGgtggaagagag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75311 True 517 lncRNA 0.44 2 31819932 31863678

Neighbor

gene id symbol gene type direction distance location
LOC103043728 NA coding downstream 60851 31743872 ~ 31759081 (-)
LOC103041868 NA coding downstream 208978 31598462 ~ 31610954 (-)
LOC111192668 NA coding downstream 240144 31577353 ~ 31579788 (-)
tmem132c si:dkeyp-14d3.1,LOC107676622,LOC107728438,LOC107659267,LOC107550917,LOC108442515 coding downstream 387281 30967612 ~ 31432651 (-)
glt1d1 NA coding downstream 976632 30762503 ~ 30843300 (-)
tti2 NA coding upstream 9938 31873616 ~ 31879260 (-)
slc18a1 slc18a1,LOC107702874,LOC107722997,LOC107591929,LOC106587027 coding upstream 20672 31884350 ~ 31898822 (-)
LOC103047383 ppiaa,LOC108411171,LOC107691558,LOC107756846,LOC108265559 coding upstream 48361 31912039 ~ 31916431 (-)
LOC103029395 ogdha,LOC108411168,LOC107756845,LOC107691557,LOC108265558,LOC107566960 coding upstream 57143 31920821 ~ 31963870 (-)
adam9 adam9,LOC107591921,LOC107722987,LOC107702867,LOC107691559,LOC107566966 coding upstream 104847 31968525 ~ 32018419 (-)
G55788 NA non-coding downstream 89688 31728783 ~ 31730244 (-)
G55779 golga1,LOC107703180 non-coding downstream 106996 31710305 ~ 31712936 (-)
G55757 NA non-coding downstream 238863 31575369 ~ 31581069 (-)
LOC111192666 NA non-coding downstream 339466 31477576 ~ 31480466 (-)
LOC111192663 NA non-coding downstream 344295 31474911 ~ 31475637 (-)
G55874 NA non-coding upstream 3721 31867399 ~ 31869197 (-)
G55884 LOC108411167 non-coding upstream 45338 31909016 ~ 31910332 (-)
LOC111192671 NA non-coding upstream 255927 32119605 ~ 32122006 (-)
G55939 LOC108440819,LOC108265606 non-coding upstream 357466 32221144 ~ 32239724 (-)
G55938 NA non-coding upstream 377743 32241421 ~ 32242539 (-)
LOC103043418 arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626 other downstream 79711 31731464 ~ 31740221 (-)
LOC103027498 LOC108411246,LOC106585447 other downstream 129124 31635481 ~ 31690808 (-)
LOC103046862 LOC108410878 other downstream 1885502 29896515 ~ 29934430 (-)
kiaa1671 NA other downstream 1979179 29744028 ~ 29840753 (-)
LOC103031600 lrrc75ba,LOC108414797,LOC107753104,LOC107712478,LOC105891565 other downstream 3219422 28554727 ~ 28600510 (-)
LOC103021360 LOC108440818,LOC107659619,LOC108265551,LOC107726210,LOC107553829,LOC107684495 other upstream 908349 32772027 ~ 32802160 (-)
LOC103023237 NA other upstream 1285396 33149074 ~ 33177650 (-)
LOC103038119 LOC108412501,LOC107754395,LOC107671045 other upstream 3227052 35090730 ~ 35108420 (-)
acaa2 acaa2,LOC107671002 other upstream 3421744 35285422 ~ 35293421 (-)
c6h22orf39 NA other upstream 3432663 35296341 ~ 35299750 (-)

Expression


Co-expression Network