G55939 (LOC108440819,LOC108265606)


Basic Information

Item Value
gene id G55939
gene name LOC108440819,LOC108265606
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 32221144 ~ 32239724 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU75433
AGCGAAGTCATCTGGACTGTTTTCAATCTTAAACTTGTTGAGTAACAGACGCAGCACCTGCGGCGTCGTCATGCAGCTGTTTATCCTCACGTTGGTCACGGAGCCGTACGCCGGGAAATGGCCATTGATGGAGAATCTGTGCCTTCTGATTCGTCTCTGGTCGCTAGGAGACCGCCTGTTACCCCGCCTCAACACACCAGCATCACTTTTGGTCCTGAGCAGCTGAGAAGAGGTGTCAACACCAtCTTCCTCATCATTCTCCTCTCCTGTCATGCTCCTATCTGATTGGCTCTCTGGTTCTGTCACCTCAATGGAGGGCGGAGCTTGTTTCTGACCCTCAGGGcTTTGGTTGTCGAGGTTGCAGCCCGAGTGCCAGGATGTGGAGGAGGGAGGAGGTCTGATACGCTCGTGGTCATCCTGCATCTGCAATCTGATTGGTCGGCGCAAACCCCAGGAGATATTGAGAAGACCCTCCACAATCAACTCATCTTCTTCCTCTCTGTGCCTGAGTTGCAGGTTCTGTCCTTCATAGTAGAGGTTATAGGTCTTCAGGTGTGACAGGATGCTGCTTTTGCTGATGTACTTATTCTCTCCAACCTGCACTCCTTCACGCCTGTCATCCATCTTATCTCCAACACAACTGCATGGGTGAGAACCCACGCGCGGATTCCGTTGTTGTCAAGCGCGAGCGTCCCGTCGTCACGACGCTCCCGGGCTCGAGCCGCTGCTTCTCCCTccaaagccccgccccctcccttcttctcctcctcctactccttcttttcttttagGTTAACGTTAACTAACGTTACGCTGACGTTACAAAACGTTTTGATAAGAAGCTGTCGCGCGCTCTGTTCTCGCGCTCTCCGTCCACGCGCCTGGACCAACAATTATCTATAAAGGGGGCATTG

Function

NR:

description
PREDICTED: ras association domain-containing protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75433 True 914 lncRNA 0.53 7 32221144 32239724

Neighbor

gene id symbol gene type direction distance location
fam160b2 fam160b2 coding downstream 181796 32025660 ~ 32039348 (-)
adam9 adam9,LOC107591921,LOC107722987,LOC107702867,LOC107691559,LOC107566966 coding downstream 202725 31968525 ~ 32018419 (-)
LOC103029395 ogdha,LOC108411168,LOC107756845,LOC107691557,LOC108265558,LOC107566960 coding downstream 257274 31920821 ~ 31963870 (-)
LOC103047383 ppiaa,LOC108411171,LOC107691558,LOC107756846,LOC108265559 coding downstream 304713 31912039 ~ 31916431 (-)
slc18a1 slc18a1,LOC107702874,LOC107722997,LOC107591929,LOC106587027 coding downstream 322322 31884350 ~ 31898822 (-)
ccdc92 ccdc92,LOC107742742,LOC107687960 coding upstream 18051 32257775 ~ 32280329 (-)
ncor2 LOC108412761,LOC107742750 coding upstream 210429 32450153 ~ 32632080 (-)
ep400 ep400 coding upstream 495689 32735413 ~ 32770670 (-)
LOC111192669 NA coding upstream 577393 32817117 ~ 32820294 (-)
adgrd1 NA coding upstream 588444 32828168 ~ 32915531 (-)
LOC111192671 NA non-coding downstream 99138 32119605 ~ 32122006 (-)
G55884 LOC108411167 non-coding downstream 310812 31909016 ~ 31910332 (-)
G55874 NA non-coding downstream 351947 31867399 ~ 31869197 (-)
G55858 NA non-coding downstream 357466 31819932 ~ 31863678 (-)
G55788 NA non-coding downstream 490900 31728783 ~ 31730244 (-)
G55938 NA non-coding upstream 1697 32241421 ~ 32242539 (-)
G55952 NA non-coding upstream 13219 32252943 ~ 32253161 (-)
G56089 LOC108412767 non-coding upstream 197819 32437543 ~ 32442453 (-)
G56085 NA non-coding upstream 204677 32444401 ~ 32444639 (-)
G56110 NA non-coding upstream 585116 32824840 ~ 32826872 (-)
LOC103043418 arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626 other downstream 480923 31731464 ~ 31740221 (-)
LOC103027498 LOC108411246,LOC106585447 other downstream 530336 31635481 ~ 31690808 (-)
LOC103046862 LOC108410878 other downstream 2286714 29896515 ~ 29934430 (-)
kiaa1671 NA other downstream 2380391 29744028 ~ 29840753 (-)
LOC103031600 lrrc75ba,LOC108414797,LOC107753104,LOC107712478,LOC105891565 other downstream 3620634 28554727 ~ 28600510 (-)
LOC103021360 LOC108440818,LOC107659619,LOC108265551,LOC107726210,LOC107553829,LOC107684495 other upstream 532303 32772027 ~ 32802160 (-)
LOC103023237 NA other upstream 909350 33149074 ~ 33177650 (-)
LOC103038119 LOC108412501,LOC107754395,LOC107671045 other upstream 2851006 35090730 ~ 35108420 (-)
acaa2 acaa2,LOC107671002 other upstream 3045698 35285422 ~ 35293421 (-)
c6h22orf39 NA other upstream 3056617 35296341 ~ 35299750 (-)

Expression


Co-expression Network