G55978


Basic Information

Item Value
gene id G55978
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 32447672 ~ 32448789 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU75476
GGATCACTGTTGACTTCATGAGCGTTTGTTTCTACAATATCGGAGCGGACTGTCCTTAGATACTTCAGAAAAAGACCTAACTGAGGAAAACGGAACAGCTCTCCTGTTCTCCTCactgcagaaaaacaaacaaaaaaatcatgctTAATGCATATATAACCTAGTGTGCACACGGACACACACTCTGTGTGTACTGAcatacatactacacacacccCATTCAGGTCCACTGTACCTCAAAATGTGCCTCAGTGAGTCTCAGATACTGGAAATAGAAAGACGCAGTGGCGGATCCGAGAGTTCCGGACTCCATATGGGTGCAAAGCGACGCCACCAGCAGCCCAGATTTAAGACAGAAATGCATAGCTGCAGTTTTCACCCCacagtgtgtatcagtgtgtgtgtgtgtttgtgaggttCACACACAGTGGGACAGTGCAGCTTCTGTGTGCATCAGTTATAAAAGAGAAGAGTAAAGTCAGTCTGCCGCTGGACTACAGTATGGAGAAGTGAGTATCCTGAGCATTCGGATGAGGAACACTCTAAAACACAGGAGCAACACTACCTACAGAAGCTCATTCCCACCAGACTGCTTTCATCTTCCTTTACTCTTTCTGACAGCATGATGTCAGTGtccttaaaactgttttttgtttgggAATAAAGATGGTAATGAACTTGAACTTCAAAACAGCAGGTACTCATTTTAAGATACTCATTCTGAGGACACCATGTCAAAATGTTAAGAAAGTCAAAAAACTTGCTGAAATGAGATGAACTGGGTCAAAATgtagaaatatttataaaagttggcgttattttttacttttttaagtcaatatttcttttaaacaattttatgatGCACTGAAGTATTTTAAGGTTACGTTTTTTTCTTAGGTTCAAAAGAATTTAAAGATAAGAcagatttctatttttttctgatgttatgtTTGATAATTGTTTGATGCTACAGTAAAACTGAGAACTCCAGAGTCATTCCGGAGACATCATGTCTAAATGTTGAGAAATAGCCATTTAAAAAACTTGAAATGAGAAACAGGgcaaattttttttccagtcgtttttttttttactttttaaagtcaatatttatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75476 True 1118 lncRNA 0.38 1 32447672 32448789

Neighbor

gene id symbol gene type direction distance location
rflna fam101a,LOC107687957,LOC107553832,LOC108412767 coding upstream 7661 32417679 ~ 32440011 (+)
LOC103025291 NA coding upstream 196663 32244560 ~ 32251009 (+)
LOC103022464 rassf2a,LOC108440819,LOC108265606,LOC106580442,LOC107687959 coding upstream 205113 32221177 ~ 32242559 (+)
nudt18 NA coding upstream 423054 32020346 ~ 32024618 (+)
LOC103029092 NA coding upstream 537861 31905217 ~ 31909811 (+)
LOC111192715 NA coding downstream 264760 32713549 ~ 32729908 (+)
LOC103026160 NA coding downstream 879997 33328786 ~ 33360143 (+)
LOC103024594 NA coding downstream 927230 33376019 ~ 33378613 (+)
gck gck,LOC107550933 coding downstream 1054826 33503615 ~ 33509374 (+)
LOC103039216 LOC108440668 coding downstream 1062722 33511511 ~ 33520503 (+)
G55977 NA non-coding upstream 869 32444733 ~ 32446803 (+)
G55955 NA non-coding upstream 142899 32304301 ~ 32304773 (+)
G55833 NA non-coding upstream 421767 32025596 ~ 32025905 (+)
G55846 adam9,LOC104959316 non-coding upstream 463382 31980914 ~ 31984290 (+)
G55837 NA non-coding upstream 503283 31939377 ~ 31944389 (+)
G55979 ncor2,LOC108412761 non-coding downstream 709 32449498 ~ 32470210 (+)
G55988 ncor2 non-coding downstream 14799 32463588 ~ 32466440 (+)
G55995 NA non-coding downstream 41112 32489901 ~ 32493420 (+)
G56003 NA non-coding downstream 100382 32549171 ~ 32828819 (+)
G56008 NA non-coding downstream 202237 32651026 ~ 32718326 (+)
slc23a2 slc23a2,LOC108440813,LOC108265605,LOC107684505,LOC107753122,LOC100702287 other upstream 230261 32183077 ~ 32217411 (+)
LOC103024127 kcnip3a,LOC108440810,LOC107753121,LOC107687962,LOC107684506,LOC107566017,LOC108264878,LOC101482209,LOC107553838 other upstream 297102 32059409 ~ 32150570 (+)
G55844 adam9,LOC107591921,LOC107702867,LOC107722987 other upstream 470253 31974681 ~ 31977419 (+)
G55831 LOC107691557,LOC108411168 other upstream 523577 31920820 ~ 31924095 (+)
G55532 cgnl1 other upstream 1897611 30528862 ~ 30550061 (+)
G56160 NA other downstream 909425 33358214 ~ 33366012 (+)
G56193 aplnra,LOC108441910,LOC107753098,LOC107712463,LOC107550977,LOC107703172,LOC107554406,LOC107687998 other downstream 955785 33404574 ~ 33406650 (+)
izumo1 NA other downstream 1116039 33564828 ~ 33595818 (+)
LOC103037863 adra2b,LOC108440671,LOC108264887,LOC107554404,LOC107753091 other downstream 1186363 33635152 ~ 33640077 (+)
fgf17 fgf17,LOC103025711,LOC107698084,LOC107678395,LOC107721084 other downstream 2054325 34503114 ~ 34511684 (+)

Expression


Co-expression Network