G55979 (ncor2,LOC108412761)


Basic Information

Item Value
gene id G55979
gene name ncor2,LOC108412761
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 32449498 ~ 32470210 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU75477
TCCTGAGATTATTCCAAGTTCCTAAATTATGATTATGACATGTTTGTGGCCAAAACAAAAGGATGAAAAAAAAGACATCTGGCAGGAATGAACTTCAGTTTAAAACAATATGAGAGCCCATACGAGAGtccaaaacatgttttaaggccagaaaagacaaaaaaaatctacaaaagaaaagaagtgaTTTGTCCTACGAGCAATCTTGGAGTGATGGCACACGCTAATATCTGTGTGCACGTGCacaaacatactgtacacacaaacacgcttacaaatacaataaaacacacatttctgcagcagtggagctttaaaagccacactcactcactgcaTGTGTGATGGGGTCcatttggagtgtgtgtgagtgtgtatgtgttttttttttttttttggagaggtATTATAAAACAGAGGGacgtgtgtatgaatgtgtgtgtgaacaaTGAATGAGTTTAGAGGTGTTTTAATATGGTTGTATGCATACTAATTTGCATGTAGGcatatttatgtgtatgtgcTCTCATTAGGTGTGTACTGCTTCACTGTTCACGagaatgtaaatgtgtgtgtgtgtgtgtgtatgtgtgttaccTGGATCTATGGGGATGCCCCGGGGAAGAGTGGAAGGATCGAAGGGCAGAGGTATCGGTCCACGGTACATATCTGCTCCCAAACCCTGCAGCAGTCGCTCATAGGAAGCAAGGGAGGCTGGGTGTTCAGCCACGCCCGGCAGGGGAGACTTGGTGGCACTCACCTCACGAGGAGTGGGAGTGGACTTCCTCTCTTGCTGAGGAACTTTAGAGGAAC

Function

symbol description
ncor2 Predicted to enable transcription corepressor activity. Acts upstream of or within hematopoietic stem cell differentiation; macrophage differentiation; and neutrophil differentiation. Is expressed in several structures, including anterior axial hypoblast; cardiovascular system; central nervous system; eye; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in osteoarthritis. Orthologous to human NCOR2 (nuclear receptor corepressor 2).

NR:

description
PREDICTED: nuclear receptor corepressor 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75477 True 813 lncRNA 0.43 2 32449498 32470210

Neighbor

gene id symbol gene type direction distance location
rflna fam101a,LOC107687957,LOC107553832,LOC108412767 coding upstream 9487 32417679 ~ 32440011 (+)
LOC103025291 NA coding upstream 198489 32244560 ~ 32251009 (+)
LOC103022464 rassf2a,LOC108440819,LOC108265606,LOC106580442,LOC107687959 coding upstream 206939 32221177 ~ 32242559 (+)
nudt18 NA coding upstream 424880 32020346 ~ 32024618 (+)
LOC103029092 NA coding upstream 539687 31905217 ~ 31909811 (+)
LOC111192715 NA coding downstream 243339 32713549 ~ 32729908 (+)
LOC103026160 NA coding downstream 858576 33328786 ~ 33360143 (+)
LOC103024594 NA coding downstream 905809 33376019 ~ 33378613 (+)
gck gck,LOC107550933 coding downstream 1033405 33503615 ~ 33509374 (+)
LOC103039216 LOC108440668 coding downstream 1041301 33511511 ~ 33520503 (+)
G55978 NA non-coding upstream 709 32447672 ~ 32448789 (+)
G55977 NA non-coding upstream 2695 32444733 ~ 32446803 (+)
G55955 NA non-coding upstream 144725 32304301 ~ 32304773 (+)
G55833 NA non-coding upstream 423593 32025596 ~ 32025905 (+)
G55846 adam9,LOC104959316 non-coding upstream 465208 31980914 ~ 31984290 (+)
G55995 NA non-coding downstream 19691 32489901 ~ 32493420 (+)
G56003 NA non-coding downstream 78961 32549171 ~ 32828819 (+)
G56008 NA non-coding downstream 180816 32651026 ~ 32718326 (+)
LOC111192670 NA non-coding downstream 240753 32710963 ~ 32713543 (+)
G56040 NA non-coding downstream 344798 32815008 ~ 32815843 (+)
slc23a2 slc23a2,LOC108440813,LOC108265605,LOC107684505,LOC107753122,LOC100702287 other upstream 232087 32183077 ~ 32217411 (+)
LOC103024127 kcnip3a,LOC108440810,LOC107753121,LOC107687962,LOC107684506,LOC107566017,LOC108264878,LOC101482209,LOC107553838 other upstream 298928 32059409 ~ 32150570 (+)
G55844 adam9,LOC107591921,LOC107702867,LOC107722987 other upstream 472079 31974681 ~ 31977419 (+)
G55831 LOC107691557,LOC108411168 other upstream 525403 31920820 ~ 31924095 (+)
G55532 cgnl1 other upstream 1899437 30528862 ~ 30550061 (+)
G56160 NA other downstream 888004 33358214 ~ 33366012 (+)
G56193 aplnra,LOC108441910,LOC107753098,LOC107712463,LOC107550977,LOC107703172,LOC107554406,LOC107687998 other downstream 934364 33404574 ~ 33406650 (+)
izumo1 NA other downstream 1094618 33564828 ~ 33595818 (+)
LOC103037863 adra2b,LOC108440671,LOC108264887,LOC107554404,LOC107753091 other downstream 1164942 33635152 ~ 33640077 (+)
fgf17 fgf17,LOC103025711,LOC107698084,LOC107678395,LOC107721084 other downstream 2032904 34503114 ~ 34511684 (+)

Expression


Co-expression Network