G56040


Basic Information

Item Value
gene id G56040
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 32815008 ~ 32815843 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU75550
GGTgcccaaaatgtttttattctgttcaGGTCCATTGGAACACACAAGGTTCTCCACTAATGACAATGTGGCGATCCatggagaacacacacacacacacacacacacacacacacataagagGTCTTCTTCAGATCGCACTTAGTCTGGAACCTCCCCCTTGACCGTACCTCCATGGGTGACCCTACCAGGAACCTAAGTTCCAGACGGCATCGCTCTCAGGTTCATTGGAACACACAAGATTCTCCACCAACGGCAAGGTGGCGATCCATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75550 True 273 lncRNA 0.50 2 32815008 32815843

Neighbor

gene id symbol gene type direction distance location
LOC111192715 NA coding upstream 85100 32713549 ~ 32729908 (+)
rflna fam101a,LOC107687957,LOC107553832,LOC108412767 coding upstream 374997 32417679 ~ 32440011 (+)
LOC103025291 NA coding upstream 563999 32244560 ~ 32251009 (+)
LOC103022464 rassf2a,LOC108440819,LOC108265606,LOC106580442,LOC107687959 coding upstream 572449 32221177 ~ 32242559 (+)
nudt18 NA coding upstream 790390 32020346 ~ 32024618 (+)
LOC103026160 NA coding downstream 512943 33328786 ~ 33360143 (+)
LOC103024594 NA coding downstream 560176 33376019 ~ 33378613 (+)
gck gck,LOC107550933 coding downstream 687772 33503615 ~ 33509374 (+)
LOC103039216 LOC108440668 coding downstream 695668 33511511 ~ 33520503 (+)
LOC103038175 dusp2,LOC108440670 coding downstream 803471 33619314 ~ 33624752 (+)
G56008 NA non-coding upstream 96682 32651026 ~ 32718326 (+)
LOC111192670 NA non-coding upstream 101465 32710963 ~ 32713543 (+)
G55995 NA non-coding upstream 321588 32489901 ~ 32493420 (+)
G55979 ncor2,LOC108412761 non-coding upstream 344798 32449498 ~ 32470210 (+)
G55988 ncor2 non-coding upstream 348568 32463588 ~ 32466440 (+)
G56075 NA non-coding downstream 334075 33149918 ~ 33177607 (+)
G56147 NA non-coding downstream 404683 33220526 ~ 33226416 (+)
G56159 NA non-coding downstream 533372 33349215 ~ 33349630 (+)
G56201 NA non-coding downstream 646567 33462410 ~ 33466117 (+)
G56203 NA non-coding downstream 665067 33480910 ~ 33483273 (+)
slc23a2 slc23a2,LOC108440813,LOC108265605,LOC107684505,LOC107753122,LOC100702287 other upstream 597597 32183077 ~ 32217411 (+)
LOC103024127 kcnip3a,LOC108440810,LOC107753121,LOC107687962,LOC107684506,LOC107566017,LOC108264878,LOC101482209,LOC107553838 other upstream 664438 32059409 ~ 32150570 (+)
G55844 adam9,LOC107591921,LOC107702867,LOC107722987 other upstream 837589 31974681 ~ 31977419 (+)
G55831 LOC107691557,LOC108411168 other upstream 890913 31920820 ~ 31924095 (+)
G55532 cgnl1 other upstream 2264947 30528862 ~ 30550061 (+)
G56160 NA other downstream 542371 33358214 ~ 33366012 (+)
G56193 aplnra,LOC108441910,LOC107753098,LOC107712463,LOC107550977,LOC107703172,LOC107554406,LOC107687998 other downstream 588731 33404574 ~ 33406650 (+)
izumo1 NA other downstream 748985 33564828 ~ 33595818 (+)
LOC103037863 adra2b,LOC108440671,LOC108264887,LOC107554404,LOC107753091 other downstream 819309 33635152 ~ 33640077 (+)
fgf17 fgf17,LOC103025711,LOC107698084,LOC107678395,LOC107721084 other downstream 1687271 34503114 ~ 34511684 (+)

Expression


Co-expression Network