G56193 (aplnra,LOC108441910,LOC107753098,LOC107712463,LOC107550977,LOC107703172,LOC107554406,LOC107687998)


Basic Information

Item Value
gene id G56193
gene name aplnra,LOC108441910,LOC107753098,LOC107712463,LOC107550977,LOC107703172,LOC107554406,LOC107687998
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 33404574 ~ 33406650 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU75764
ACAGACACTAAATACACTTCTGAAGTTGCAGGATTTAGCAGGAAAAATAGTATGAAAATACTGTACAATTTGAACTTTTAGACCagtgtatgcacacacacactctcatacacactttaatacacacacagacgttCACGTATGAGCCACAGTTAATTCCAGTCAGTATCTGTGGGAGACACATTGCAGGATGGAGAAactcactaatacacacacatcccacacatacacacgtacgcacgcacacaaacacattcacaaTGACACACAAGCATTTTTCTTACAGTAGAAtacacaaaaaacagaaaaataacatgTTATTTACATACTGTACACTTATAGCACTTAGCAGTACATTTTTTCAACACTTAATAGTCTACAGCAGTTCAGTTCtctcatcagttcatcagtcaTTTCTCTAGTCAGGACACACATACTGACTGGCCTCACTCTAATCTCTAGTGCGGCTACAAACCGCCCCATTGCTTTTAAATGGGAGACTGAGATAAGGAGAGACTCTGAGAAAAAAAGCGGGAGATAGAAACGTAGATGTCCTTTATCTCATCTCATACAGTCAAAGCAACATTCGTGGTTTATAAGGGCTTGGCCCAGCCAAGCCACGCCAGCCAGCTTGGTTCCAGCCGTCTGGCCGCTTCCACACTTGTCCCACCGCGGGGTCCTCTCACCTTTTGCCCTTTTCTCTAACTGCCCCATCAAGCGCTCCCCCGAACCCTGAGTTTTCTCACACTTTGGTGGCCAGCGACTGCACCTCGGACTTCTGGGTCTGGGCGCTGAGGGTGGACGACATGGAGCTCATGCGCCCGTGCACCGCCTTCTTCAGGTTCAGGAGGCACAGGCACTGTGAACGGAAGCGCAGGTCAAAGAAGGCGTACAGGAACGGATTGAGGCAGCTGTTGACGTAGGCCAAGCAGGTGGCGTAAGGGTGGGCCAGCAGAAGAAAGTGCAGGAAGCCACAGGAGGTGGGTGCCAGGTCCAGGTAGGATAGGGCATCCATGCTCTTGAGGACGTGAAATGGCGTCCAGCAGAAAGCAAAGACCACAACCAGTGTGGTGATGATCTTAAGCAGTCGTCGTTTCTTCTGGTCCTCCTTGCGCAGGTGACTGAAGTGGCGGGCAACGGTACAGCCAATGAAGCAGTAGCACACAGTCATGGCCAGGAACGGCAGTAGGAAGCCCAGGGCAGACGAGGATAAGCTTAAGCCGGCAATCCAGAGCGATTCGTGGTGCCGATTAAAGGCCACCAGACTGAAGTCCATGGCACAGCTGGTGCGGTTGCTGTCTGCCTCGTCCACCGTTGTCCGGAAGAGAAGGGTCGGGATGGCCAGAGTCATAGACAGCAGCCAGATTGCGCCTAGAGAAGCCAGCATGGCACCTCGAGAGCGTAGCCGGCCGCTGGACAGCGAGTGGACGATGGCCAGGTAGCGGTCAAAGCTCAAGCAGGTGAGGCAGAAGACGCTAGCGTACATGTTGACCAGCACCACATAACTGCTGATCTTGCACAGGGCCACACCAAAAGGCCAGTGGTACCCAAGAGCTGTGTACACAGCCCAGAGTGGCAGGGTCACCACGAAGGTCAGGTCAGCAAGGGCCAGATTGCCAATGTAAACATCAGCTGCACGGCGCTTTGACTTGGAGCGCCAGACTGTGAAGATGACCACACCGTTCCCAGAAAGACCCAGGATAAAAATGAGCATGTAGAGCACGGGGATGAGGGAATAGGATGGTTCCCACTCTGAATAGTCACATGCAGTCTCGTTGTCTTCATAGTAGTCATAGGTGTCCGGATATTCCGTGGGGTCCATGGTGGGATAGAGGTTGAACTCCAGCTTTTCAAGTTCTCAAACCTTCTCAGAGTCCTTAGACCTTCTCAAAGTCCTCAAAAGCTTCTTTGCCAAAGGTTCCTCCAGGTGTATTTTGAAATGTCAAAGCGTGTGAACCAGATCTTGCAGAGTTCCAGAAGCCAACAAACTTGTTCCCTTTCCCTGGTAGTACAGAGAGAAGTTTGTGCACGTGGAGAGCAG

Function

symbol description
aplnra Enables apelin receptor activity. Acts upstream of with a positive effect on Kupffer's vesicle development. Acts upstream of or within with a positive effect on determination of heart left/right asymmetry and determination of liver left/right asymmetry. Acts upstream of or within circulatory system development; gastrulation; and regulation of nodal signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including blastoderm; blastomere; cardiovascular system; immature eye; and mesoderm. Orthologous to human APLNR (apelin receptor).

NR:

description
PREDICTED: apelin receptor A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75764 True 2041 TUCP 0.51 2 33404574 33406650

Neighbor

gene id symbol gene type direction distance location
LOC103024594 NA coding upstream 25961 33376019 ~ 33378613 (+)
LOC103026160 NA coding upstream 44431 33328786 ~ 33360143 (+)
LOC111192715 NA coding upstream 674666 32713549 ~ 32729908 (+)
rflna fam101a,LOC107687957,LOC107553832,LOC108412767 coding upstream 964563 32417679 ~ 32440011 (+)
LOC103025291 NA coding upstream 1153565 32244560 ~ 32251009 (+)
gck gck,LOC107550933 coding downstream 96965 33503615 ~ 33509374 (+)
LOC103039216 LOC108440668 coding downstream 104861 33511511 ~ 33520503 (+)
LOC103038175 dusp2,LOC108440670 coding downstream 212664 33619314 ~ 33624752 (+)
nr6a1 nr6a1,nr6a1a,LOC107698081,LOC107721088,LOC107753334,LOC107563838 coding downstream 939943 34346593 ~ 34377925 (+)
LOC103026546 LOC108266031,LOC107563852 coding downstream 1002698 34409348 ~ 34431835 (+)
G56159 NA non-coding upstream 54944 33349215 ~ 33349630 (+)
G56147 NA non-coding upstream 178158 33220526 ~ 33226416 (+)
G56075 NA non-coding upstream 226967 33149918 ~ 33177607 (+)
G56040 NA non-coding upstream 588731 32815008 ~ 32815843 (+)
LOC111192670 NA non-coding upstream 691031 32710963 ~ 32713543 (+)
G56201 NA non-coding downstream 55760 33462410 ~ 33466117 (+)
G56203 NA non-coding downstream 74260 33480910 ~ 33483273 (+)
G56213 NA non-coding downstream 116453 33523103 ~ 33533957 (+)
G56235 NA non-coding downstream 202045 33608695 ~ 33609257 (+)
G56278 NA non-coding downstream 235563 33642213 ~ 33642422 (+)
G56160 NA other upstream 38562 33358214 ~ 33366012 (+)
slc23a2 slc23a2,LOC108440813,LOC108265605,LOC107684505,LOC107753122,LOC100702287 other upstream 1187163 32183077 ~ 32217411 (+)
LOC103024127 kcnip3a,LOC108440810,LOC107753121,LOC107687962,LOC107684506,LOC107566017,LOC108264878,LOC101482209,LOC107553838 other upstream 1254004 32059409 ~ 32150570 (+)
G55844 adam9,LOC107591921,LOC107702867,LOC107722987 other upstream 1427155 31974681 ~ 31977419 (+)
G55831 LOC107691557,LOC108411168 other upstream 1480479 31920820 ~ 31924095 (+)
izumo1 NA other downstream 158178 33564828 ~ 33595818 (+)
LOC103037863 adra2b,LOC108440671,LOC108264887,LOC107554404,LOC107753091 other downstream 228502 33635152 ~ 33640077 (+)
fgf17 fgf17,LOC103025711,LOC107698084,LOC107678395,LOC107721084 other downstream 1096464 34503114 ~ 34511684 (+)
G56414 tcf7l1,LOC107721095,LOC107556226 other downstream 1306568 34713218 ~ 34751563 (+)
LOC103047498 NA other downstream 1555150 34961800 ~ 34989285 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_036649 aplnra coding NC_007119.7 CM002892.2 40325690 ~ 40327397 (-)
grasscarp (Ctenopharyngodon idella) CI01000053_05621226_05622308 APJA, APLNRA, APLNR coding CI01000053 null 5620409 ~ 5622498 (-)