G56203


Basic Information

Item Value
gene id G56203
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 33480910 ~ 33483273 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU75778
CATTTAGGAGCTTTTAGGAGTGtcccattcatcatgaaatttagCTTGGGTCACCATATTTTGATCACCAGCCCTCAATTCTCAACTACACAACCAGTTCTGTGTGTTTCATTCACTTTTCATACTCACGATTCTGCTGAATACTTCTGGGCGCCTCCAATAAACCCGTACTTGTCCGTGTCCCTGGAGCTGGTGAAGCCATTCAGCTCCGAGTCTGATCCCAGGGAGCTCTCCTCATCCAGATGACTGCCCACAGTCCGCAAACTCACAGTGTCCGCGGACATTCGCCCGTTTTCCAGCTTGTCCAGAAGAGCCATTGGCTTAACAAGCAACTTATCACTCAATATTGCACTTAAACACGACCCAGTGCCTGCATTTTTAAACCTTCGCCTGAAGACAGATTGTGTTAGCTAACTAGATAATCGCCTTTAAATGAGCTTAGCGCAGTCTGACACTTCGGCTAGTGTTCAGTTAGCGTTAGCGTTAACTAAGCGCTGTCAGTCTCCGGCTcattattagtaataataaactattatttCTGCAACGTGAATAGTCAAATACTGCTGTCTAAAAATGACCAAGACAGCTGTTCTCCCGTTGTAACAGTTTAAAGGTAGTTTTAAACtagtttttacagttaaaatcaGTCTGTTTACAGGAGGAACTTATCGGTAACCTAGCGTTAGTTAGTaaagttagcgttagctaggttagcttagctaacgccAAAATATAGTTACCAGCTAATATAATCACCCAATGTAGCTAACGTAAACGTTAAATAAGCTAATAAACGCTACCTccacaaattaataataaagccCCGTAAAAACAGAACGCTTCATGAATAGAAAAACATACATAAGATGAATTTTTATCTAATGGAATTCCCAGGCCCTGTAGctttagccagttagcttagcttatccTACCAGCGTCCGTTTCATTTAACCTAAACAGATTTGGGACACGAATATTTTCCACAAACCGAAATGAAGCCGCGACGGGCGGATATACTAGTTACAGCAGTTTCCTCCTGGTCAGCTCTCCCAGTTGTTTGGAGTACAGTCCCGTGACTTTGAAGAAACAGTAACTTGTTCCATAAATTCCGAGTTTAACGCAGAAATGTCATTTTTGCAGTTTGCCAACAGCCTCCTCCTCAGTGACAGAGCTGCGCATGTCATTGGGAAGGGCGCGTCCCAGTCGGCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75778 True 1209 lncRNA 0.43 2 33480910 33483273

Neighbor

gene id symbol gene type direction distance location
LOC103024594 NA coding upstream 102297 33376019 ~ 33378613 (+)
LOC103026160 NA coding upstream 120767 33328786 ~ 33360143 (+)
LOC111192715 NA coding upstream 751002 32713549 ~ 32729908 (+)
rflna fam101a,LOC107687957,LOC107553832,LOC108412767 coding upstream 1040899 32417679 ~ 32440011 (+)
LOC103025291 NA coding upstream 1229901 32244560 ~ 32251009 (+)
gck gck,LOC107550933 coding downstream 20342 33503615 ~ 33509374 (+)
LOC103039216 LOC108440668 coding downstream 28238 33511511 ~ 33520503 (+)
LOC103038175 dusp2,LOC108440670 coding downstream 136041 33619314 ~ 33624752 (+)
nr6a1 nr6a1,nr6a1a,LOC107698081,LOC107721088,LOC107753334,LOC107563838 coding downstream 863320 34346593 ~ 34377925 (+)
LOC103026546 LOC108266031,LOC107563852 coding downstream 926075 34409348 ~ 34431835 (+)
G56201 NA non-coding upstream 14793 33462410 ~ 33466117 (+)
G56159 NA non-coding upstream 131280 33349215 ~ 33349630 (+)
G56147 NA non-coding upstream 254494 33220526 ~ 33226416 (+)
G56075 NA non-coding upstream 303303 33149918 ~ 33177607 (+)
G56040 NA non-coding upstream 665067 32815008 ~ 32815843 (+)
G56213 NA non-coding downstream 39830 33523103 ~ 33533957 (+)
G56235 NA non-coding downstream 125422 33608695 ~ 33609257 (+)
G56278 NA non-coding downstream 158940 33642213 ~ 33642422 (+)
G56283 NA non-coding downstream 243645 33726918 ~ 33727139 (+)
G56289 NA non-coding downstream 267629 33750902 ~ 33756692 (+)
G56193 aplnra,LOC108441910,LOC107753098,LOC107712463,LOC107550977,LOC107703172,LOC107554406,LOC107687998 other upstream 74260 33404574 ~ 33406650 (+)
G56160 NA other upstream 114898 33358214 ~ 33366012 (+)
slc23a2 slc23a2,LOC108440813,LOC108265605,LOC107684505,LOC107753122,LOC100702287 other upstream 1263499 32183077 ~ 32217411 (+)
LOC103024127 kcnip3a,LOC108440810,LOC107753121,LOC107687962,LOC107684506,LOC107566017,LOC108264878,LOC101482209,LOC107553838 other upstream 1330340 32059409 ~ 32150570 (+)
G55844 adam9,LOC107591921,LOC107702867,LOC107722987 other upstream 1503491 31974681 ~ 31977419 (+)
izumo1 NA other downstream 81555 33564828 ~ 33595818 (+)
LOC103037863 adra2b,LOC108440671,LOC108264887,LOC107554404,LOC107753091 other downstream 151879 33635152 ~ 33640077 (+)
fgf17 fgf17,LOC103025711,LOC107698084,LOC107678395,LOC107721084 other downstream 1019841 34503114 ~ 34511684 (+)
G56414 tcf7l1,LOC107721095,LOC107556226 other downstream 1229945 34713218 ~ 34751563 (+)
LOC103047498 NA other downstream 1478527 34961800 ~ 34989285 (+)

Expression


Co-expression Network