izumo1


Basic Information

Item Value
gene id izumo1
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 33564828 ~ 33595818 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU75801
AGCTGCTAAACAGAAAAGCCACGTTTCCTTGTATTTCATTCTTTTCACCCTGTTTACAGTGTGACGTCCTGTCTGCAGTGTGACCGTGCGGTCCTCAACATGCACGAGGACTTCATAGCTGCTGCTAAAGGAGTTACCATCCAAGATCAGATGGATCTAAAGGAAATCACTGACCAGGCCTACACCAACTATAAGAAGACCAGTGAGGAGCTTCGTGGGGTAATTGACCCCACAACACTGTACCGAGCACGGACAGAGTATCAGAGTGAGTTCCAGAGGTACTGGAAGGAGCACAAGAAGGG
>TU75802
CTTCTGTCCCTCCTCTCCCAAAACTTGGGAAAAGTGTTTGTTTGTATATCTTAGTAAACCTGAAACACAGTGTTAGCACTACGCCGAAACTCAGGACTGATACTCTCAGCCACAAACATCTCACATGTGTGACGTCCTGTCTGCAGTGTGACCGTGCGGTCCTCAACATGCACGAGGACTTCATAGCTGCTGCTAAAGGAGTTACCATCCAAGATCAGATGGATCTAAAGGAAATCACTGACCAGGCCTACACCAACTATAAGAAGACCAGTGAGGAGCTTCGTGGGGTAATTGACCCCACAACACTGTACCGAGCACGGACAGAGTATCAGAGTGAGTTCCAGAGGTACTGGAAGGAGCACAAGAAGGG
>TU75803
CACATTGCAGGTTATATTGGAGGCTGTTTTCCAAATGTTTTCCggatctctctcttttttccccctgGTGATGGTGTGTTTGGTGTCCAGTGTGACGTCCTGTCTGCAGTGTGACCGTGCGGTCCTCAACATGCACGAGGACTTCATAGCTGCTGCTAAAGGAGTTACCATCCAAGATCAGATGGATCTAAAGGAAATCACTGACCAGGCCTACACCAACTATAAGAAGACCAGTGAGGAGCTTCGTGGGGTAATTGACCCCACAACACTGTACCGAGCACGGACAGAGTATCAGAGTGAGTTCCAGAGGTACTGGAAGGAGCACAAGAAGGG
>XM_022670920.1
atatatttatatagtgtaTTACAATGACTATACCAAAGAGTAGGAGCATGGCTCAGCCAACGgcagtttaaaatttaaaacatcacATTCTGCTCCTGTCAGAGACTATAACACACATTGCAGGTTATATTGGAGGCTGTTTTCCAAATGTTTTCCggatctctctcttttttccccctgGTGATGGTGTGTTTGGTGTCCAGTGTGACGTCCTGTCTGCAGTGTGACCGTGCGGTCCTCAACATGCACGAGGACTTCATAGCTGCTGCTAAAGGAGTTACCATCCAAGATCAGATGGATCTAAAGGAAATCACTGACCAGGCCTACACCAACTATAAGAAGACCAGTGAGGAGCTTCGTGGGGTAATTGACCCCACAACACTGTACCGAGCACGGACAGAGTATCAGAGTGAGTTCCAGAGGTACTGGAAGGAGCACAAGAAGGGCCTGTGTCCAAACACATGTGGTTTGCTGTTTCAGGGTGTGATGAATTGTTCCTCTTGCCAGTATGGGTTGTTTCAATGCTGGTTAGAACCTCAGCAGGACTGTGGAGTGCATGAGTTAAAGGGGCAGGAGGGCGAGCAAGTGGTGCTGGACTGTTTTCTCTCTTGGCACAGTCTAATAATCGGACAGGCTGAGTACCACTACTCCTGGAAGCGGGGCGCCAGAaatTTTTCAGATCAGGAGTTGTTTGAGGTTCTGGTGGTGACAGAGGAGTCCAAGATAGTCCTGAATCAGCTGAGTGTAAGTGAGCAGGGAGTGTACCGCTGCCTCCTGCTGGATAAACATGGCACTGAGCTCTCCAGGATGCACTTCATTCTGAACAtcatTCCATCTCCTTCTTCAACCCCACGGCCAATCCCCACACTGCCTGCACTGCCCAGCCTGGACTTGAGACCAACCAGACTTCACAGAGACACATTGATCATCATACTGGCTTTTCTCACTGTGGTCAGCATCTCAGCAAGCCTTGCCATCATAGTGAGCCTCTGCACTATGATGATGGTAAAAAGGCAAAAGTCTGTGAGAACAAGGCCAAAAGAAGACGAGGAAGTACAGAATGAACAGTCTGATCAAAAGAACAGAAGTGGACTAATAAAACATCCAATTAAATATGTATGACTACGGCAAAAGCATAAACAAACCCTGCAGCTTTTCTTTCCATTGTATGACTCTTAAATAGGCCAAAGTGATAACAGATCAGGATGGAGAAAGATCAAAAACAGGATGATGAGAGTCAGGCGGCTGTGGGGGTCAGTTCTCTGCTATTCTTTGCTGTTCTCTGCTGTTTACAGGCTGGGTTATTTTGGGTTTATCTTTGTGAATGATCTTTCTGTTGAAGGCATATTTCCACCAGGCTCAGGCTCAGGCACAGTCACATGCAGCTCCACCACAGCTCAGAGACAGATTATACACACGCCAGATGCCAGCCGTGCAGCGAAAGccaaattcattcattcatccgaACGGAAGAATCAAAACAAGGAGGCGGACACGTTTctgatgaatgaatgacatgccCGGGCCCAGCGAACACGTGGACGAGAGAAACCAAGAGACAAATCTCATGGTCGCAGGCAAATCTCACGGATTACAACGTTTTTTTTCTAGAATTAATATTCCCCTGCCCAGTGCTTAATCCTAGGGATTATCCATCATTCTTTGAGGCCACTGCAGGGGGACGAGGAGATCAAACTTTAAAGCGGTTGTTTTCCCATGCAAGTTCCCCTTTCCCAAATTCAGCATTCTTAGCCATCTGACTGCGCAACTTCCTGTTTTATCATGCCCCATTTAGAGAGCCAGATTTAGAGCTGATTCACTCTGATTGCGGTGTGTAGTGCTGAGTTAGACGACGATATGTTTAGGCTTGTCCAGTTAGCAGATTTGTGTttgaatatttctaaatttaTCTTTTATTCTACACATACTAGACATGAAATCACTACAGGAGGCCTAGAGTATGATATATTAACTAAAGCTTCACATttcattataaattattcatattGCTCATGAGCCAATAGGAGCAACTCACTATCATGATAACAAActtgagtttattttttaacaagaattaaacaataaaacaatattatacattttaggtcAATTTTATGCCACTAATAGAATTATATGTGTAATACCATAAAAAAGGCATTTACACATTACTTTTAAAGAGCAAGGTGGTGGGATTTTAATAGCAGAACAGCTCATAGGCCAATTTCCAGAAAGGGAAGAAATGGGATattaaaaatggacaaatgcttgaatatcctaaataaatcaAGCATATAATATAAAGCTACTTTATTGAAACAAAGTTGAGATACGGCTCATTCTTGTTAAAAGGCAATTTTGGCCAAGTAAACATAATGGGTACTGTTGAgatcagcaaaaatgattgaggtatTAAGGTtgttattgtacaataagtcaataatgtaattattgtgactggCAACATTAACAGTGTTGGAACCTTCACCATGCAATAAAACACAAGTGTCTGAAAAACAGCAACCTTACAGGAGAAATATACAAACCTTAACTTTTAAGATAAGTCATTTAGAAATGTGTTAATAtaaggtcattttggagaaatcAAGAAATGTTAACACAGTGTAAAGGAAAAGTTTCTAATTGTTCAAATtaagtagtaaactaaaaatctacaaaaatggacatgtttgtttttcattagacacTGTTGATGTACGATCACATATAGTTTGTTCATTCCttgttttgttggagtaactgacTCTACTGTCCAAGAAAGACTTTTGAATAGACTTTGGATCATTGCTGTGAGgacttgattgcattcagtgaaaaaaaaagcttcagtgAGTTCAAGATGTATTATGATCATGACCCCACTGCGTCGTCAACACCCCAACTCCACTGTTCAGTGTTGGGGCCTGTATACGCGCCTTGTCAACATCTGACTTTACGTATGGAGCAATAGGTCCATGTTTATCTGGTCGAGGCAGATCTGTTCTATCAGTAATATTTCTCTACAGAGGCTTGACACGCTGTGTGTCTGTcttagcaatgggtgcaacttaaagtagctggtGGCATTCATTAGAAGGTTCACAGACATTCTGACACAGTGTACCTACAATATTTTccactttaataaaaacatatttattaaaccTTTAATACATGTCAATCCACATTATATCAGTAAGTTCCAAATGCCCAGTGAGAGTGAATATTCATCATTAACAAGATTATTAACAAGATTGTTTAACAAGACAAGGTATTTACTTTTTCCAAGTAATATGGTAGCTATATGGTGGCACAACATGACAAAGCTGAATATGAATACACTAGCTCAGCATGTCAGTTAGACTTAAACACATCCGGCTCACTGGATGTCCCAGTATGctgattattttgttttgtttcattctTGATCTCACAGAAACTGTTTCAGAGGGTTTGTTTTTCTCACTTCAGTGACCTGTTCTCGTATCAGTACCTGTTTTTGACGGCTATTATTCATCAGCTTCCTCTGCGAGAGTGTGGCGGTGGTTAACGGTTTGGCTTAAAGCGTGTTTAGTTTCTCTTAATTTGCAAAGGTACACCCACAGGAAACCGAGCCAGTTTCATAAACACTTGTTCTGTCTTGTTTTGTCCGGTTCTTGTCTCATAGTCTTACTCTGGACCTAAATAATTCACAGCAGCAGTTTGCTGAAGCAGCAGTTTGCTGCTTTAATAAATATAGATGCGTCAATCATTTGATGACTCAAGTAGAAGAAGACAAGGAACGAAAACAAGTACAAACTGTACTCTTATATCGGAATATGAACTGAAGACTGTTGACTGTACTGTTCCCTTTAGTTCTATTTCCAAGAAACATTAGTTGCATTAGGGCATCCTTTTGACAGCTCAACACGCTcagaggagaacactaactgctgATCCTGTGATCAGttgatgtttattttgtatttaaaaaatgggtGTAACAAAATTATACAAATTTATACTAATAAAGTGTAagtcactctttttttttacaagtgatTAACAAGGAATGAAAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75801 False 302 TUCP 0.49 3 33577711 33581368
TU75802 False 370 TUCP 0.48 3 33564828 33581368
TU75803 False 333 TUCP 0.50 2 33578706 33581368
XM_022670920.1 True 4056 mRNA 0.40 8 33578593 33595818

Neighbor

gene id symbol gene type direction distance location
LOC103039216 LOC108440668 coding upstream 44325 33511511 ~ 33520503 (+)
gck gck,LOC107550933 coding upstream 55454 33503615 ~ 33509374 (+)
LOC103024594 NA coding upstream 186215 33376019 ~ 33378613 (+)
LOC103026160 NA coding upstream 204685 33328786 ~ 33360143 (+)
LOC111192715 NA coding upstream 834920 32713549 ~ 32729908 (+)
LOC103038175 dusp2,LOC108440670 coding downstream 23496 33619314 ~ 33624752 (+)
nr6a1 nr6a1,nr6a1a,LOC107698081,LOC107721088,LOC107753334,LOC107563838 coding downstream 750775 34346593 ~ 34377925 (+)
LOC103026546 LOC108266031,LOC107563852 coding downstream 813530 34409348 ~ 34431835 (+)
LOC103024866 tubb2b,tubb4b,LOC103024866,LOC101061694,LOC105901187 coding downstream 934482 34530300 ~ 34533334 (+)
LOC103022994 LOC108426650 coding downstream 1043998 34639816 ~ 34665998 (+)
G56213 NA non-coding upstream 30871 33523103 ~ 33533957 (+)
G56203 NA non-coding upstream 81555 33480910 ~ 33483273 (+)
G56201 NA non-coding upstream 98711 33462410 ~ 33466117 (+)
G56159 NA non-coding upstream 215198 33349215 ~ 33349630 (+)
G56147 NA non-coding upstream 338412 33220526 ~ 33226416 (+)
G56235 NA non-coding downstream 12877 33608695 ~ 33609257 (+)
G56278 NA non-coding downstream 46395 33642213 ~ 33642422 (+)
G56283 NA non-coding downstream 131100 33726918 ~ 33727139 (+)
G56289 NA non-coding downstream 155084 33750902 ~ 33756692 (+)
G56305 NA non-coding downstream 189565 33785383 ~ 33785661 (+)
G56193 aplnra,LOC108441910,LOC107753098,LOC107712463,LOC107550977,LOC107703172,LOC107554406,LOC107687998 other upstream 158178 33404574 ~ 33406650 (+)
G56160 NA other upstream 198816 33358214 ~ 33366012 (+)
slc23a2 slc23a2,LOC108440813,LOC108265605,LOC107684505,LOC107753122,LOC100702287 other upstream 1347417 32183077 ~ 32217411 (+)
LOC103024127 kcnip3a,LOC108440810,LOC107753121,LOC107687962,LOC107684506,LOC107566017,LOC108264878,LOC101482209,LOC107553838 other upstream 1414258 32059409 ~ 32150570 (+)
G55844 adam9,LOC107591921,LOC107702867,LOC107722987 other upstream 1587409 31974681 ~ 31977419 (+)
LOC103037863 adra2b,LOC108440671,LOC108264887,LOC107554404,LOC107753091 other downstream 39334 33635152 ~ 33640077 (+)
fgf17 fgf17,LOC103025711,LOC107698084,LOC107678395,LOC107721084 other downstream 907296 34503114 ~ 34511684 (+)
G56414 tcf7l1,LOC107721095,LOC107556226 other downstream 1117400 34713218 ~ 34751563 (+)
LOC103047498 NA other downstream 1365982 34961800 ~ 34989285 (+)
ikbkb ikbkb,vdac3,LOC107560056,LOC107671013,LOC107754399 other downstream 1630667 35226485 ~ 35272528 (+)

Expression


Co-expression Network