G56289


Basic Information

Item Value
gene id G56289
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 33750902 ~ 33756692 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU75886
tgtCATGGtggggtacagaatacagacactcgcggaaccagttaaggattttattaaaaacccacagggtacagagaatgagattagcaatgcaaacaaaacaccagtaaaggtATACCTGGGGGCGAAGAGCTTAACAGGATAGTGAGGCAGTCCAGTGGTCATACACGAAGTaagcagtatcagaggcaatccaaaaacagaaacgataaacagtccaatggtcatatacgaggcaggcagtatcaaaggtgatccgaaaaacataaacgataaacagtccagggtaATACACGAAAAAATCCACAACgaaggcaaaggcaaaaatcggtagtcaaaaacaaaaggcaaggtcatacacagaaaataatcacagaaataacgctttgtaatgtcgGACGAAACCTAGGCAATACGCGGCGCAGGTGAGCGTCTGAGCTGTACTTTTATACTGGTGCTAATACTCAGGGCTTCCTGGCCGGGgtaggtgaggtgtcacgtgatcagcagtgtgtgtgttgtcagcgggtggtgcattctgggtattgtagttgttaggctgacaacctccgttggagaccagtgtggaaggacaggaagtccctacagcaccagacgtgacaa
>TU75888
tgtCATGGtggggtacagaatacagacactcgcggaaccagttaaggattttattaaaaacccacagggtacagagaatgagattagcaatgcaaacaaaacaccagtaaaggtATACCTGGGGGCGAAGAGCTTAACAGGATAGTGAGGCAGTCCAGTGGTCATACACGAAGTaagcagtatcagaggcaatccaaaaacagaaacgataaacagtccaatggtcatatacgaggcaggcagtatcaaaggtgatccgaaaaacataaacgataaacagtccagggtaATACACGAAAAAATCCACAACgaaggcaaaggcaaaaatcggtagtcaaaaacaaaaggcaaggtcatacacagaaaataatcacagaaataacgctttgtaatgtcgGACGAAACCTAGGCAATACGCGGCGCAGGTGAGCGTCTGAGCTGTACTTTTATACTGGTGCTAATACTCAGGGCTTCCTGGCCGGGgtaggtgaggtgtcacgtgatcagcagtgtgtgtgttgtcagcgggtggtgcattctgggtattgtagttgttaggctgacaacctccgttggagaccagtgtggaaggacaggaagtccctacagcaccagacgtgacaa
>TU75889
tgtCATGGtggggtacagaatacagacactcgcggaaccagttaaggattttattaaaaacccacagggtacagagaatgagattagcaatgcaaacaaaacaccagtaaaggtATACCTGGGGGCGAAGAGCTTAACAGGATAGTGAGGCAGTCCAGTGGTCATACACGAAGTaagcagtatcagaggcaatccaaaaacagaaacgataaacagtccaatggtcatatacgaggcaggcagtatcaaaggtgatccgaaaaacataaacgataaacagtccagggtaATACACGAAAAAATCCACAACgaaggcaaaggcaaaaatcggtagtcaaaaacaaaaggcaaggtcatacacagaaaataatcacagaaataacgctttgtaatgtcgGACGAAACCTAGGCAATACGCGGCGCAGGTGAGCGTCTGAGCTGTACTTTTATACTGGTGCTAATACTCAGGGCTTCCTGGCCGGGgtaggtgaggtgtcacgtgatcagcagtgtgtgtgttgtcagcgggtggtgcattctgggtattgtagttgttaggctgacaacctccgttggagaccagtgtggaaggacaggaagtccctacagcaccagacgtgacaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75886 True 624 lncRNA 0.46 2 33750902 33756692
TU75888 False 624 lncRNA 0.46 2 33750902 33756692
TU75889 False 624 lncRNA 0.46 2 33750902 33756692

Neighbor

gene id symbol gene type direction distance location
LOC103038175 dusp2,LOC108440670 coding upstream 126150 33619314 ~ 33624752 (+)
LOC103039216 LOC108440668 coding upstream 230399 33511511 ~ 33520503 (+)
gck gck,LOC107550933 coding upstream 241528 33503615 ~ 33509374 (+)
LOC103024594 NA coding upstream 372289 33376019 ~ 33378613 (+)
LOC103026160 NA coding upstream 390759 33328786 ~ 33360143 (+)
nr6a1 nr6a1,nr6a1a,LOC107698081,LOC107721088,LOC107753334,LOC107563838 coding downstream 589901 34346593 ~ 34377925 (+)
LOC103026546 LOC108266031,LOC107563852 coding downstream 652656 34409348 ~ 34431835 (+)
LOC103024866 tubb2b,tubb4b,LOC103024866,LOC101061694,LOC105901187 coding downstream 773608 34530300 ~ 34533334 (+)
LOC103022994 LOC108426650 coding downstream 883124 34639816 ~ 34665998 (+)
LOC103022237 ube2d4,UBE2D4,LOC101482088,LOC101172587,LOC108236573,LOC107393720 coding downstream 1091387 34848079 ~ 34870296 (+)
G56283 NA non-coding upstream 23763 33726918 ~ 33727139 (+)
G56278 NA non-coding upstream 108480 33642213 ~ 33642422 (+)
G56235 NA non-coding upstream 141645 33608695 ~ 33609257 (+)
G56213 NA non-coding upstream 216945 33523103 ~ 33533957 (+)
G56203 NA non-coding upstream 267629 33480910 ~ 33483273 (+)
G56305 NA non-coding downstream 28691 33785383 ~ 33785661 (+)
G56346 NA non-coding downstream 706782 34463474 ~ 34502982 (+)
LOC111192672 NA non-coding downstream 708628 34465320 ~ 34477898 (+)
LOC111192673 NA non-coding downstream 721198 34477890 ~ 34499623 (+)
G56364 NA non-coding downstream 788995 34545687 ~ 34545937 (+)
LOC103037863 adra2b,LOC108440671,LOC108264887,LOC107554404,LOC107753091 other upstream 110825 33635152 ~ 33640077 (+)
izumo1 NA other upstream 155084 33564828 ~ 33595818 (+)
G56193 aplnra,LOC108441910,LOC107753098,LOC107712463,LOC107550977,LOC107703172,LOC107554406,LOC107687998 other upstream 344252 33404574 ~ 33406650 (+)
G56160 NA other upstream 384890 33358214 ~ 33366012 (+)
slc23a2 slc23a2,LOC108440813,LOC108265605,LOC107684505,LOC107753122,LOC100702287 other upstream 1533491 32183077 ~ 32217411 (+)
fgf17 fgf17,LOC103025711,LOC107698084,LOC107678395,LOC107721084 other downstream 746422 34503114 ~ 34511684 (+)
G56414 tcf7l1,LOC107721095,LOC107556226 other downstream 956526 34713218 ~ 34751563 (+)
LOC103047498 NA other downstream 1205108 34961800 ~ 34989285 (+)
ikbkb ikbkb,vdac3,LOC107560056,LOC107671013,LOC107754399 other downstream 1469793 35226485 ~ 35272528 (+)
LOC103032256 dynll1,LOC103397138,LOC107554284,LOC107559583,LOC100698873 other downstream 1519387 35276079 ~ 35284271 (+)

Expression


Co-expression Network