G56293


Basic Information

Item Value
gene id G56293
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 33750902 ~ 33756692 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU75894
ttgtcacgtctggtgctgtagggacttcctgtccttccacactggtctccaacggaggttgtcagcctaacaactacaatacccagaatgcaccacccgctgacaacacacacactgctgatcacgtgacacctcacctacCCCGGCCAGGAAGCCCTGAGTATTAGCACCAGTATAAAAGTACAGCTCAGACGCTCACCTGCGCCGCGTATTGCCTAGGTTTCGTCcgacattacaaagcgttatttctgtgattattttctgtgtatgaccttgccttttgtttttgactaccgatttttgcctttgccttcGTTGTGGATTTTTTCGTGTATtaccctggactgtttatcgtttatgtttttcggatcacctttgatactgcctgcctcgtatatgaccattggactgtttatcgtttctgtttttggattgcctctgatactgcttACTTCGTGTATGACCACTGGACTGCCTCACTATCCTGTTAAGCTCTTCGCCCCCAGGTATacctttactggtgttttgtttgcattgctaatctcattctctgtaccctgtgggtttttaataaaatccttaactggttccgcgagtgtctgtattctgtaccccaCCATGaca
>TU75895
ttgtcacgtctggtgctgtagggacttcctgtccttccacactggtctccaacggaggttgtcagcctaacaactacaatacccagaatgcaccacccgctgacaacacacacactgctgatcacgtgacacctcacctacCCCGGCCAGGAAGCCCTGAGTATTAGCACCAGTATAAAAGTACAGCTCAGACGCTCACCTGCGCCGCGTATTGCCTAGGTTTCGTCcgacattacaaagcgttatttctgtgattattttctgtgtatgaccttgccttttgtttttgactaccgatttttgcctttgccttcGTTGTGGATTTTTTCGTGTATtaccctggactgtttatcgtttatgtttttcggatcacctttgatactgcctgcctcgtatatgaccattggactgtttatcgtttctgtttttggattgcctctgatactgcttACTTCGTGTATGACCACTGGACTGCCTCACTATCCTGTTAAGCTCTTCGCCCCCAGGTATacctttactggtgttttgtttgcattgctaatctcattctctgtaccctgtgggtttttaataaaatccttaactggttccgcgagtgtctgtattctgtaccccaCCATGaca
>TU75896
ttgtcacgtctggtgctgtagggacttcctgtccttccacactggtctccaacggaggttgtcagcctaacaactacaatacccagaatgcaccacccgctgacaacacacacactgctgatcacgtgacacctcacctacCCCGGCCAGGAAGCCCTGAGTATTAGCACCAGTATAAAAGTACAGCTCAGACGCTCACCTGCGCCGCGTATTGCCTAGGTTTCGTCcgacattacaaagcgttatttctgtgattattttctgtgtatgaccttgccttttgtttttgactaccgatttttgcctttgccttcGTTGTGGATTTTTTCGTGTATtaccctggactgtttatcgtttatgtttttcggatcacctttgatactgcctgcctcgtatatgaccattggactgtttatcgtttctgtttttggattgcctctgatactgcttACTTCGTGTATGACCACTGGACTGCCTCACTATCCTGTTAAGCTCTTCGCCCCCAGGTATacctttactggtgttttgtttgcattgctaatctcattctctgtaccctgtgggtttttaataaaatccttaactggttccgcgagtgtctgtattctgtaccccaCCATGaca
>TU75897
ttgtcacgtctggtgctgtagggacttcctgtccttccacactggtctccaacggaggttgtcagcctaacaactacaatacccagaatgcaccacccgctgacaacacacacactgctgatcacgtgacacctcacctacCCCGGCCAGGAAGCCCTGAGTATTAGCACCAGTATAAAAGTACAGCTCAGACGCTCACCTGCGCCGCGTATTGCCTAGGTTTCGTCcgacattacaaagcgttatttctgtgattattttctgtgtatgaccttgccttttgtttttgactaccgatttttgcctttgccttcGTTGTGGATTTTTTCGTGTATtaccctggactgtttatcgtttatgtttttcggatcacctttgatactgcctgcctcgtatatgaccattggactgtttatcgtttctgtttttggattgcctctgatactgcttACTTCGTGTATGACCACTGGACTGCCTCACTATCCTGTTAAGCTCTTCGCCCCCAGGTATacctttactggtgttttgtttgcattgctaatctcattctctgtaccctgtgggtttttaataaaatccttaactggttccgcgagtgtctgtattctgtaccccaCCATGaca
>TU75898
ttgtcacgtctggtgctgtagggacttcctgtccttccacactggtctccaacggaggttgtcagcctaacaactacaatacccagaatgcaccacccgctgacaacacacacactgctgatcacgtgacacctcacctacCCCGGCCAGGAAGCCCTGAGTATTAGCACCAGTATAAAAGTACAGCTCAGACGCTCACCTGCGCCGCGTATTGCCTAGGTTTCGTCcgacattacaaagcgttatttctgtgattattttctgtgtatgaccttgccttttgtttttgactaccgatttttgcctttgccttcGTTGTGGATTTTTTCGTGTATtaccctggactgtttatcgtttatgtttttcggatcacctttgatactgcctgcctcgtatatgaccattggactgtttatcgtttctgtttttggattgcctctgatactgcttACTTCGTGTATGACCACTGGACTGCCTCACTATCCTGTTAAGCTCTTCGCCCCCAGGTATacctttactggtgttttgtttgcattgctaatctcattctctgtaccctgtgggtttttaataaaatccttaactggttccgcgagtgtctgtattctgtaccccaCCATGaca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75894 True 624 lncRNA 0.46 2 33750902 33756692
TU75895 False 624 lncRNA 0.46 2 33750902 33756692
TU75896 False 624 lncRNA 0.46 2 33750902 33756692
TU75897 False 624 lncRNA 0.46 2 33750902 33756692
TU75898 False 624 lncRNA 0.46 2 33750902 33756692

Neighbor

gene id symbol gene type direction distance location
npc1l1 npc1l1 coding downstream 186195 33536304 ~ 33564707 (-)
myl7 myl7,LOC107554405,LOC107753162,LOC107703146 coding downstream 260952 33485649 ~ 33489950 (-)
LOC103025548 tbc1d10aa,LOC108441901,LOC107703173,LOC107753095,LOC107554420,LOC107657331,LOC107712481,LOC107550973 coding downstream 268138 33462386 ~ 33482764 (-)
LOC103025241 aplnra,LOC108441910,LOC107753098,LOC107712463,LOC107550977,LOC107703172,LOC107554406,LOC107687998 coding downstream 344230 33404530 ~ 33406672 (-)
LOC103024912 hpd,hpdb,LOC108441909,LOC107723232 coding downstream 379231 33361821 ~ 33371671 (-)
adgrd2 LOC108414364 coding upstream 683378 34440070 ~ 34468155 (-)
LOC103025191 LOC103025191,LOC108426622,LOC108265895 coding upstream 778604 34535296 ~ 34539056 (-)
LOC103024553 si:dkey-90l8.3,LOC103024553,LOC108426648,LOC107698086,LOC107714563,LOC107556214,LOC107563853,LOC108264996,LOC105889949 coding upstream 822125 34578817 ~ 34586862 (-)
LOC103024249 LOC108426649 coding upstream 844720 34601412 ~ 34617121 (-)
LOC103022681 NA coding upstream 874612 34631304 ~ 34639803 (-)
G56287 NA non-coding downstream 7168 33742896 ~ 33743734 (-)
G56189 NA non-coding downstream 370275 33377159 ~ 33380627 (-)
G56186 NA non-coding downstream 384289 33358765 ~ 33366613 (-)
G56172 NA non-coding downstream 414806 33255008 ~ 33336096 (-)
G56148 NA non-coding downstream 524314 33220492 ~ 33226588 (-)
G56317 NA non-coding upstream 514893 34271585 ~ 34284706 (-)
G56323 NA non-coding upstream 539020 34295712 ~ 34296080 (-)
G56326 NA non-coding upstream 572043 34328735 ~ 34329529 (-)
G56332 NA non-coding upstream 589420 34346112 ~ 34379811 (-)
G56333 nr6a1,nr6a1a,LOC107721088,LOC107698081,LOC107753334,LOC107678448 non-coding upstream 589624 34346316 ~ 34365351 (-)
LOC103023237 NA other downstream 573252 33149074 ~ 33177650 (-)
LOC103021360 LOC108440818,LOC107659619,LOC108265551,LOC107726210,LOC107553829,LOC107684495 other downstream 948742 32772027 ~ 32802160 (-)
LOC103043418 arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626 other downstream 2010681 31731464 ~ 31740221 (-)
LOC103027498 LOC108411246,LOC106585447 other downstream 2060094 31635481 ~ 31690808 (-)
LOC103046862 LOC108410878 other downstream 3816472 29896515 ~ 29934430 (-)
LOC103038119 LOC108412501,LOC107754395,LOC107671045 other upstream 1334038 35090730 ~ 35108420 (-)
acaa2 acaa2,LOC107671002 other upstream 1528730 35285422 ~ 35293421 (-)
c6h22orf39 NA other upstream 1539649 35296341 ~ 35299750 (-)
LOC103038782 slc25a25a,LOC108430373,LOC107754405,LOC107671014,LOC107699669,LOC107560063,LOC107559565,LOC107752985 other upstream 1565293 35321985 ~ 35332434 (-)
G56638 NA other upstream 1664138 35420830 ~ 35458874 (-)

Expression


Co-expression Network