G56346


Basic Information

Item Value
gene id G56346
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 34463474 ~ 34502982 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU75963
TGCAGTACCTGTAGAGACTCTGACCGGTTCTCTGCACTCACCTGGGCACGGGATCACCTCAGGTACTTCCGTCACCTCGTGGAGGGTGAGGTTGAGCTCGTGCCAGCCTAAAAACGGCTTTGGCTCCACTGGGCGCGAGCACACCTCAAGCCTCCGGACCTGCTCGTTGTTCAGCGTCACATCCCAAACGTTTACATCCGTTATATTGCCCACAAACGGCTCCGTGAAGTTCCCGCCAAACGAATCCTGGTCCTGCCCTAGGATGAAGATCCCGTTCCCGTGCATGTCCCGGTTCGGTTCGCTCCCCTCGGCCCCGTCCCCCTTCTTTCCGTCCACGTACACCGCCCACGAGCCGTCGCTCTTGCGCCACGTGACGCACACATGGTGCCAGCGCGCGTCGTTCGGGAACGAGGCCCGGTACGCGTGGTGACGTCCGTGCACGATCAGCGCTAGCAGCACGCGCTGCCGCTTTTCGTCGGGGCGCGCGCGCAGCTGGAACTCGTTGGTGAGTGCGCGCGTCGCGTACGAGAACAGCGCGGACACGCTTTGGTGGAGCCCGTCGAACtgcacgcgcgcacacacgctTGCGGCCGCCAGTGGCGGGAAAGTGGCGGCTGCGCGCGCGTGTCCGTCCCGGGAGGCTCCGCTGAAGGAGAGTGCCGAGAGGTCTGCGTGGTTGTGGGAGGGTGTCCGTTGCTGATTCTCATCCAGACAGGACTCTGCATATTGGCCTGATTGAGAACCTGCCTGGTCCCCATTTCATCTTCTCGGTTACCCAGCACAGTGAGGGAGCTGAAGAGACTCTGACAGAAATGCCAGGCCTGGGAGAAGCTGCAGGATGTGTTCACGAGCTGATAAGCTGTGACTGAGTCCAGTCCTCATTCCAGAATCATATCCATCCAGGACCATATCCGTTACATCCAACCTGCCCTGCTACTGTCCACCGTGTCCAGCACTCTAGTGTGTGTGGAGGGAAAAGATCTGCATGAGAGAACTGTACTGGGCACCGAACTGATCCCTTATAAACACTGCAGCTCAGCGTTTTGCTCAGGACTGTATGAGCGCATGGGTTGACTCAGAAGGCATTCAGTGGCAGATCTGTCTCATTACAAACAACCCAAATCAAACACCCGCCGCAACACTGGCTCCAACACACCGGGAGTGATGGACAGTGGGCTTTGATGCcagcaggagtgtgtgtgaggtcgAGGAGGGAGCACGGACTGAGTGAGAGATAAAGAGGCAGATTGTAAAGGCAGAAGACTGAAATGAAGAGAATGAAAggatgagagagaagagaggtgaGGAGAGATTGACGGAGGGGTCAGTCGTCCTCATAGCAGGGGTCAGTCACAGgtGAGTGTTGAGGttcggctgtgtcccaattccaCTGATTGGCTGCTTCTTCGCAAGAGGCACAACTGGACAACAGTTGAGACCGTGCAGCATAGCAAGGGTGTGGTCACTTAATAGCCCAGCACTGGTCACACAAGGAGCGGTCAGAATACGCTGCAGTGAACATCTGTAAAGATCGGCTGAGTCTGAGCTTGCCCTAGGATTGGGGCGGGGGAACGGTTCATGAAGTGTGCGATTTGCATAACTATGGTGGGCTTTTGTGGCAACAGGAAACTGTTTTGTCAGGGCTACAGTTCTGAAAGTTGATTGGCTCTCTGACTCACAACTATTGGGAGGAAATATTATAAAAGCCAAAACAAAAGAAGAGCATTAAAGAAAAGTGGGAATACTCTTGAGGAACTCGTCTTTTAAAAGGGCCAAGCGCATGTTCTTTCCCCTACTCAAACGAGGGCCAacgacacacaacacacacctgtCTCACACGTCTTTAGCACATTTGACTATTCACACCCATACCACGTCAGTCTCAGGGGGGCTGAACAAGCATCACTCTGTCCTCTGCAAAATACAAACTGATGGGTGGAGAACGCATTGCAATAAACGCCAATACCATTCGTCTGTCACTACCCCAACAGAGATGGCCTGTTAACAATCATGTCAAGAGGAAATTTACTTAGAGGAATCTATAGATACTTAACTGGGTTTCATCACACTCAAAATAAA
>TU75965
attctcttctttctccacttaacaaataaattcagttcagtgtacATGTAAAGTATTCTACAGTATTACAATATTCAAAAGTGCTATAGTTAACTTACTTACAAccagagttttagggagtttgaTCTATTTTGCTAAATAAATAACTCCCCACTCAGAACTGATTCTACTGATACGAGCACCACTAGTAAACAAGAACACCATCAAGAACCGGAAGCGCTAACAAGCTAACGCAAACAGTAACTAGCcggctagttagctaactagttaacatTCTGAGACTTAAGTTAACTGTGGTGGGCGACGTTCATGAACCACGGAGCTGTTAGGGTCTGCGTGGTTGTGGGAGGGTGTCCGTTGCTGATTCTCATCCAGACAGGACTCTGCATATTGGCCTGATTGAGAACCTGCCTGGTCCCCATTTCATCTTCTCGGTTACCCAGCACAGTGAGGGAGCTGAAGAGACTCTGACAGAAATGCCAGGCCTGGGAGAAGCTGCAGGATGTGTTCACGAGCTGATAAGCTGTGACTGAGTCCAGTCCTCATTCCAGAATCATATCCATCCAGGACCATATCCGTTACATCCAACCTGCCCTGCTACTGTCCACCGTGTCCAGCACTCTAGTGTGTGTGGAGGGAAAAGATCTGCATGAGAGAACTGTACTGGGCACCGAACTGATCCCTTATAAACACTGCAGCTCAGCGTTTTGCTCAGGACTGTATGAGCGCATGGGTTGACTCAGAAGGCATTCAGTGGCAGATCTGTCTCATTACAAACAACCCAAATCAAACACCCGCCGCAACACTGGCTCCAACACACCGGGAGTGATGGACAGTGGGCTTTGATGCcagcaggagtgtgtgtgaggtcgAGGAGGGAGCACGGACTGAGTGAGAGATAAAGAGGCAGATTGTAAAGGCAGAAGACTGAAATGAAGAGAATGAAAggatgagagagaagagaggtgaGGAGAGATTGACGGAGGGGTCAGTCGTCCTCATAGCAGGGGTCAGTCACAGGGTGTGGTCACTTAATAGCCCAGCACTGGTCACACAAGGAGCGGTCAGAATACGCTGCAGTGAACATCTGTAAAGATCGGCTGAGTCTGAGCTTGCCCTAGGATTGGGGCGGGGGAACGGTTCATGAAGTGTGCGATTTGCATAACTATGGTGGGCTTTTGTGGCAACAGGAAACTGTTTTGTCAGGGCTACAGTTCTGAAAGTTGATTGGCTCTCTGACTCACAACTATTGGGAGGAAATATTATAAAAGCCAAAACAAAAGAAGAGCATTAAAGAAAAGTGGGAATACTCTTGAGGAACTCGTCTTTTAAAAGGGCCAAGCGCATGTTCTTTCCCCTACTCAAACGAGGGCCAacgacacacaacacacacctgtCTCACACGTCTTTAGCACATTTGACTATTCACACCCATACCACGTCAGTCTCAGGGGGGCTGAACAAGCATCACTCTGTCCTCTGCAAAATACAAACTGATGGGTGGAGAACGCATTGCAATAAACGCCAATACCATTCGTCTGTCACTACCCCAACAGAGATGGCCTGTTAACAATCATGTCAAGAGGAAATTTACTTAGAGGAATCTATAGATACTTAACTGGGTTTCATCACACTCAAAATAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU75963 True 2079 lncRNA 0.54 8 34463474 34502982
TU75965 False 1644 lncRNA 0.47 7 34464753 34502982

Neighbor

gene id symbol gene type direction distance location
LOC103026546 LOC108266031,LOC107563852 coding upstream 31639 34409348 ~ 34431835 (+)
nr6a1 nr6a1,nr6a1a,LOC107698081,LOC107721088,LOC107753334,LOC107563838 coding upstream 85549 34346593 ~ 34377925 (+)
LOC103038175 dusp2,LOC108440670 coding upstream 838722 33619314 ~ 33624752 (+)
LOC103039216 LOC108440668 coding upstream 942971 33511511 ~ 33520503 (+)
gck gck,LOC107550933 coding upstream 954100 33503615 ~ 33509374 (+)
LOC103024866 tubb2b,tubb4b,LOC103024866,LOC101061694,LOC105901187 coding downstream 27318 34530300 ~ 34533334 (+)
LOC103022994 LOC108426650 coding downstream 136834 34639816 ~ 34665998 (+)
LOC103022237 ube2d4,UBE2D4,LOC101482088,LOC101172587,LOC108236573,LOC107393720 coding downstream 345097 34848079 ~ 34870296 (+)
dbnl dbnl coding downstream 376838 34879820 ~ 34923018 (+)
gins4 gins4,LOC107747805,LOC107698091,LOC107678389,LOC107556221 coding downstream 487844 34990826 ~ 35005720 (+)
G56305 NA non-coding upstream 677813 33785383 ~ 33785661 (+)
G56289 NA non-coding upstream 706782 33750902 ~ 33756692 (+)
G56283 NA non-coding upstream 736335 33726918 ~ 33727139 (+)
G56278 NA non-coding upstream 821052 33642213 ~ 33642422 (+)
G56235 NA non-coding upstream 854217 33608695 ~ 33609257 (+)
G56364 NA non-coding downstream 42705 34545687 ~ 34545937 (+)
G56367 NA non-coding downstream 81190 34584172 ~ 34586827 (+)
G56368 NA non-coding downstream 98471 34601453 ~ 34603978 (+)
G56370 NA non-coding downstream 105652 34608634 ~ 34617113 (+)
G56411 tcf7l1,LOC108426610,LOC108265410,LOC107556226 non-coding downstream 204514 34707496 ~ 34711475 (+)
LOC103037863 adra2b,LOC108440671,LOC108264887,LOC107554404,LOC107753091 other upstream 823397 33635152 ~ 33640077 (+)
izumo1 NA other upstream 867656 33564828 ~ 33595818 (+)
G56193 aplnra,LOC108441910,LOC107753098,LOC107712463,LOC107550977,LOC107703172,LOC107554406,LOC107687998 other upstream 1056824 33404574 ~ 33406650 (+)
G56160 NA other upstream 1097462 33358214 ~ 33366012 (+)
slc23a2 slc23a2,LOC108440813,LOC108265605,LOC107684505,LOC107753122,LOC100702287 other upstream 2246063 32183077 ~ 32217411 (+)
fgf17 fgf17,LOC103025711,LOC107698084,LOC107678395,LOC107721084 other downstream 132 34503114 ~ 34511684 (+)
G56414 tcf7l1,LOC107721095,LOC107556226 other downstream 210236 34713218 ~ 34751563 (+)
LOC103047498 NA other downstream 458818 34961800 ~ 34989285 (+)
ikbkb ikbkb,vdac3,LOC107560056,LOC107671013,LOC107754399 other downstream 723503 35226485 ~ 35272528 (+)
LOC103032256 dynll1,LOC103397138,LOC107554284,LOC107559583,LOC100698873 other downstream 773097 35276079 ~ 35284271 (+)

Expression


Co-expression Network