G56411 (tcf7l1,LOC108426610,LOC108265410,LOC107556226)


Basic Information

Item Value
gene id G56411
gene name tcf7l1,LOC108426610,LOC108265410,LOC107556226
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 34707496 ~ 34711475 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU76051
CACACACTTCAAAACTGGAGGGGTAGTTGCAAAGGATTCTAATAAATTGCTTGTACTATGAATTAAAATTCAAAAACTACCATTAATTACACGTAAGctttaagaatttttttttgttccttctTATCTTATTAAAGAAGTTTTCAATACATGTTTACTTTATACAAGTAGTTTGCAGGATAACTGTATCAAATAAGAAACCAGTTCCAAAGTAGACTttacaaaaaatacactgtttcatagagagacacagaaaaagCGGGTGATCAAATATTGACCAATAATATTCATTTCCTTTTCACTTATCAAAAAAGTTAACCTGACATCTATTTGAAAAAGGTAAAAAGCAATGTACAGCACGTTTAAAAGGGCAGCGAGAAAACGAGGGAGGATTTCCGCTTCCTGCTGGTTCAGTCGGCCGATTTGGTTACCAAGGAGAGAGGCTGCGACTGGAACAGGGCATGATGGGAGTGCAGGGCAGCCTGGTGGAACGGGGAGGGCGGGGACAGGAGGGAGTGGTGCAGGGAGGTGAAGGGGATTGGCCGAGAGAGGAGGGGAGGAGTGGACTGGCTGGCCGGGGAGccagtggagagagagatggcggggtgagaggaggaagaggatgcTGAAGAAGacgaagaggaggaagaggaggagatggaggaagatgaggaggatgaAGGTTTGGAGATCAGAGAGAAGTGAGGGTGATGGCGATCGGGTTTGGTGGTGAGGGACAGCGGCTGGGCCTGCTCGGAGTGTGTGGGCGCTGGGGCGGCGGGGGAGGCCAGCGCGGCGGAGGGCGTGGCCGGGGAGTCCAGCATGCTGCCGTGAGATGAGGCCGGGCTGTCGATCATTTTCTCCTGAGGGAGGTACTGCACACAAGGCTTCTTGTTCCGCGCTGAGAAATCTTCTACTGTTGAGTCTGGCTTAttatctctcttcctcttcttccgcTTGccATAGTTATCTCGTGCGGACCAGCCGGGGTAGAGCTGTGAGTGCAGCTGCCGCTCTTTCCTGGCCAGCTCGTAGTATTTGGCCTGCTCCTCTCGAGACAGAGAGTGccaCCTTCGGCCCAGGATCTGGTTGATGGCAGCGCTCTCTTTAAGCGTGCATTCAGCCACCACTTTAGCTCTCATCTCCTTCATGTAGAGCATGAAGGCGTTCAGGGGCTTCTTAATGTGAGGCTTCTTGTGTGTGTGAAGTGGGGCTCAGGTCTCCGTTGGGCTCCTGTTTAATGGCAGGTGAGACGATGGCAGGATGAGGAATTCCTGTCTGATGGAGACTGTGAGGATGATGAGGCACCATGTGAGGAGAAAAGCGACTGGACACCAGACtgcagtggga

Function

symbol description
tcf7l1 Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in canonical Wnt signaling pathway and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including axial mesoderm morphogenesis; regulation of transcription, DNA-templated; and somatic stem cell population maintenance. Located in cytosol and nucleoplasm.

NR:

description
transcription factor 7-like 1-B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU76051 True 1350 lncRNA 0.51 5 34707496 34711475

Neighbor

gene id symbol gene type direction distance location
LOC103022994 LOC108426650 coding upstream 41498 34639816 ~ 34665998 (+)
LOC103024866 tubb2b,tubb4b,LOC103024866,LOC101061694,LOC105901187 coding upstream 174162 34530300 ~ 34533334 (+)
LOC103026546 LOC108266031,LOC107563852 coding upstream 275661 34409348 ~ 34431835 (+)
nr6a1 nr6a1,nr6a1a,LOC107698081,LOC107721088,LOC107753334,LOC107563838 coding upstream 329571 34346593 ~ 34377925 (+)
LOC103038175 dusp2,LOC108440670 coding upstream 1082744 33619314 ~ 33624752 (+)
LOC103022237 ube2d4,UBE2D4,LOC101482088,LOC101172587,LOC108236573,LOC107393720 coding downstream 136604 34848079 ~ 34870296 (+)
dbnl dbnl coding downstream 168345 34879820 ~ 34923018 (+)
gins4 gins4,LOC107747805,LOC107698091,LOC107678389,LOC107556221 coding downstream 279351 34990826 ~ 35005720 (+)
LOC103047196 NA coding downstream 303642 35015117 ~ 35018725 (+)
LOC103037259 pi4ka,LOC108440297,LOC107671001 coding downstream 327694 35039169 ~ 35083292 (+)
G56370 NA non-coding upstream 90383 34608634 ~ 34617113 (+)
G56368 NA non-coding upstream 103518 34601453 ~ 34603978 (+)
G56367 NA non-coding upstream 120669 34584172 ~ 34586827 (+)
G56364 NA non-coding upstream 161559 34545687 ~ 34545937 (+)
LOC111192673 NA non-coding upstream 207873 34477890 ~ 34499623 (+)
G56419 NA non-coding downstream 163086 34874561 ~ 34876645 (+)
G56437 NA non-coding downstream 379261 35090736 ~ 35093338 (+)
G56444 NA non-coding downstream 399566 35111041 ~ 35168021 (+)
G56445 NA non-coding downstream 403510 35114985 ~ 35115756 (+)
G56448 NA non-coding downstream 422108 35133583 ~ 35136048 (+)
fgf17 fgf17,LOC103025711,LOC107698084,LOC107678395,LOC107721084 other upstream 195812 34503114 ~ 34511684 (+)
LOC103037863 adra2b,LOC108440671,LOC108264887,LOC107554404,LOC107753091 other upstream 1067419 33635152 ~ 33640077 (+)
izumo1 NA other upstream 1111678 33564828 ~ 33595818 (+)
G56193 aplnra,LOC108441910,LOC107753098,LOC107712463,LOC107550977,LOC107703172,LOC107554406,LOC107687998 other upstream 1300846 33404574 ~ 33406650 (+)
G56160 NA other upstream 1341484 33358214 ~ 33366012 (+)
G56414 tcf7l1,LOC107721095,LOC107556226 other downstream 1743 34713218 ~ 34751563 (+)
LOC103047498 NA other downstream 250325 34961800 ~ 34989285 (+)
ikbkb ikbkb,vdac3,LOC107560056,LOC107671013,LOC107754399 other downstream 515010 35226485 ~ 35272528 (+)
LOC103032256 dynll1,LOC103397138,LOC107554284,LOC107559583,LOC100698873 other downstream 564604 35276079 ~ 35284271 (+)
G56504 NA other downstream 709243 35420718 ~ 35458877 (+)

Expression


Co-expression Network