G56444


Basic Information

Item Value
gene id G56444
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35111041 ~ 35168021 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU76100
atttatttcacagagttaagaaaaataataataatttcagcaTTTTTGTGTATTAGTATTTAAACACATGATTTCATTATTAGTATTTagatacacaaaaataaacaaacacacacatatatttatatatatttatatattagtcGATGGCACCACCAGCGGAATGATACACAAGAACTCAGGAAGGcaccaataacacacacacacacacacacacacacacacacaaacacaatatcAGCAGTGCTGCAACACAAAATCATATAAGGCGATTTCATATTCAAGGACAATCCagaggatacacacacacacacacacacacacacacacacacacactaaacacacacactatacacacacacacactatacacacacacacactatacacacacactatacacacacactatacacacacacacacacactatacacacacacacacactatacacacacacacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU76100 True 468 lncRNA 0.35 3 35111041 35168021

Neighbor

gene id symbol gene type direction distance location
snap29 snap29,LOC107722859,LOC107560055,LOC107726963 coding upstream 21856 35083719 ~ 35089185 (+)
LOC103037259 pi4ka,LOC108440297,LOC107671001 coding upstream 27749 35039169 ~ 35083292 (+)
LOC103047196 NA coding upstream 92316 35015117 ~ 35018725 (+)
gins4 gins4,LOC107747805,LOC107698091,LOC107678389,LOC107556221 coding upstream 105321 34990826 ~ 35005720 (+)
dbnl dbnl coding upstream 188023 34879820 ~ 34923018 (+)
LOC103034472 NA coding downstream 23783 35191804 ~ 35195665 (+)
enkd1 enkd1,LOC107670972 coding downstream 91899 35259920 ~ 35265350 (+)
polb polb coding downstream 97947 35265968 ~ 35274621 (+)
mrpl40 LOC107753002,LOC107671004,LOC107754402,LOC107559600 coding downstream 125902 35293923 ~ 35296002 (+)
gle1 gle1,LOC102792584 coding downstream 131773 35299794 ~ 35308446 (+)
G56437 NA non-coding upstream 17703 35090736 ~ 35093338 (+)
G56419 NA non-coding upstream 234396 34874561 ~ 34876645 (+)
G56411 tcf7l1,LOC108426610,LOC108265410,LOC107556226 non-coding upstream 399566 34707496 ~ 34711475 (+)
G56370 NA non-coding upstream 493928 34608634 ~ 34617113 (+)
G56368 NA non-coding upstream 507063 34601453 ~ 34603978 (+)
G56459 NA non-coding downstream 3877 35171898 ~ 35176979 (+)
G56465 NA non-coding downstream 29424 35197445 ~ 35199268 (+)
LOC111192732 NA non-coding downstream 49870 35217891 ~ 35218782 (+)
G56479 NA non-coding downstream 85297 35253318 ~ 35254002 (+)
G56482 NA non-coding downstream 117430 35285451 ~ 35287472 (+)
LOC103047498 NA other upstream 121756 34961800 ~ 34989285 (+)
G56414 tcf7l1,LOC107721095,LOC107556226 other upstream 359478 34713218 ~ 34751563 (+)
fgf17 fgf17,LOC103025711,LOC107698084,LOC107678395,LOC107721084 other upstream 599357 34503114 ~ 34511684 (+)
LOC103037863 adra2b,LOC108440671,LOC108264887,LOC107554404,LOC107753091 other upstream 1470964 33635152 ~ 33640077 (+)
izumo1 NA other upstream 1515223 33564828 ~ 33595818 (+)
ikbkb ikbkb,vdac3,LOC107560056,LOC107671013,LOC107754399 other downstream 58464 35226485 ~ 35272528 (+)
LOC103032256 dynll1,LOC103397138,LOC107554284,LOC107559583,LOC100698873 other downstream 108058 35276079 ~ 35284271 (+)
G56504 NA other downstream 252697 35420718 ~ 35458877 (+)
G56701 pola2,LOC107710902,LOC107657899 other downstream 788083 35956104 ~ 35964510 (+)
G57066 NA other downstream 1837252 37005273 ~ 37005798 (+)

Expression


Co-expression Network