G56445


Basic Information

Item Value
gene id G56445
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35114985 ~ 35115756 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU76101
tgtgtgtgtgtgtgtgtgtgtgtatttctctAAATGATTTCTCTCTGTAAGATTTGATGGGACAGAGAGACGCTGCtgatatttaactattttatcATTACAGAGTAAAACAGCATCATAATGAGCTTCTCTGAGTATTTTAGCTTCATAGTTTTTAAAGAACTAAGAAAAAACATGAGATCTGAGAGGAAAAGATGAGTAAAGACAGAAATCATACCTGTGTTCTTTCATCTCCTTTAAAATGtggtattgctattttaaaaggttatttttGTTAGTTCTAACTTatcaatataataaacaaataatgtgttttataaaaagtattatgatatattttaatCTAAGTTATTCTGACTgttttgagtttttcttttctgttgaGTCGACAGGTTTTACTTCTCCAAAAACAGAAATCctgaaatattcaaataaagcagaaataatGTCTCAGTATTTGTATGATGGTGTTGCTGCACTACAGATCACTGTTCACTATTAGAAACACTCAGAGTTACACGATGATAACAGGAGATCCGGGATTTAAATCAACTACAAGCGTTCGGTCTTTTGGCACAGTGATTACATTTCTCTTTCATTCACatactctctcactcctcctctcactcctcctctcACTCCGTCTTCCAGACCTTGTTCAGGACTTTCACCACCTCCTCGTATATGATGAAGACGATGGCTACGTCTAAACACACGCGGCCGAGCCGAGGAACCGTTCCTTTATAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU76101 True 748 lncRNA 0.35 2 35114985 35115756

Neighbor

gene id symbol gene type direction distance location
snap29 snap29,LOC107722859,LOC107560055,LOC107726963 coding upstream 25800 35083719 ~ 35089185 (+)
LOC103037259 pi4ka,LOC108440297,LOC107671001 coding upstream 31693 35039169 ~ 35083292 (+)
LOC103047196 NA coding upstream 96260 35015117 ~ 35018725 (+)
gins4 gins4,LOC107747805,LOC107698091,LOC107678389,LOC107556221 coding upstream 109265 34990826 ~ 35005720 (+)
dbnl dbnl coding upstream 191967 34879820 ~ 34923018 (+)
LOC103034472 NA coding downstream 76048 35191804 ~ 35195665 (+)
enkd1 enkd1,LOC107670972 coding downstream 144164 35259920 ~ 35265350 (+)
polb polb coding downstream 150212 35265968 ~ 35274621 (+)
mrpl40 LOC107753002,LOC107671004,LOC107754402,LOC107559600 coding downstream 178167 35293923 ~ 35296002 (+)
gle1 gle1,LOC102792584 coding downstream 184038 35299794 ~ 35308446 (+)
G56437 NA non-coding upstream 21647 35090736 ~ 35093338 (+)
G56419 NA non-coding upstream 238340 34874561 ~ 34876645 (+)
G56411 tcf7l1,LOC108426610,LOC108265410,LOC107556226 non-coding upstream 403510 34707496 ~ 34711475 (+)
G56370 NA non-coding upstream 497872 34608634 ~ 34617113 (+)
G56368 NA non-coding upstream 511007 34601453 ~ 34603978 (+)
G56448 NA non-coding downstream 17827 35133583 ~ 35136048 (+)
G56459 NA non-coding downstream 56142 35171898 ~ 35176979 (+)
G56465 NA non-coding downstream 81689 35197445 ~ 35199268 (+)
LOC111192732 NA non-coding downstream 102135 35217891 ~ 35218782 (+)
G56479 NA non-coding downstream 137562 35253318 ~ 35254002 (+)
LOC103047498 NA other upstream 125700 34961800 ~ 34989285 (+)
G56414 tcf7l1,LOC107721095,LOC107556226 other upstream 363422 34713218 ~ 34751563 (+)
fgf17 fgf17,LOC103025711,LOC107698084,LOC107678395,LOC107721084 other upstream 603301 34503114 ~ 34511684 (+)
LOC103037863 adra2b,LOC108440671,LOC108264887,LOC107554404,LOC107753091 other upstream 1474908 33635152 ~ 33640077 (+)
izumo1 NA other upstream 1519167 33564828 ~ 33595818 (+)
ikbkb ikbkb,vdac3,LOC107560056,LOC107671013,LOC107754399 other downstream 110729 35226485 ~ 35272528 (+)
LOC103032256 dynll1,LOC103397138,LOC107554284,LOC107559583,LOC100698873 other downstream 160323 35276079 ~ 35284271 (+)
G56504 NA other downstream 304962 35420718 ~ 35458877 (+)
G56701 pola2,LOC107710902,LOC107657899 other downstream 840348 35956104 ~ 35964510 (+)
G57066 NA other downstream 1889517 37005273 ~ 37005798 (+)

Expression


Co-expression Network