G56465


Basic Information

Item Value
gene id G56465
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35197445 ~ 35199268 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU76134
CTGTAACAgaatataacatgttataacatCTGTAgtgataaatagataaatatgatCTTAAAAAGCAGaacattatgaaaaaatatggaGAAAAGCAAAAAGCACCGGGACAAAAAGtacaatgaacacacacacacacacactgacacacacacacaggttataTCTGGGATCAACCCAAAtcaatgtcTGTGTCCGATCCTGCAGATTCTTAGTGCTAAAAAAGGTTttagaaaagaataaaacagaagtttttatgtaaattaattaacattagtttttacaatttacaggaaaaatactacatttccactacatttatatttctctgcattttatttcatgtataataataaatatttacatatgaaAAGGTCTGTAGCATTTCCATCCTGAATATGTACTGCTACATCCCACTACTGCACAAAAACAATCATCCCTTTTACACCAGTCTATAGTTTAACACactctcttctcattcagtgatttaactttattttatttaatgtattttctacattaatctcctgatctaaagctgatgaactgagattaaggtgatttgaggtgatttaactgggatgagctggataaaggtctttaatattaaatttataatgtagaaaaatcatagaaagaaagaaacacactgaatgagagagagagaagaggagtgTGACggtttgactggtgctgtatttCTGTAGGACTCTGGTGATGAAGAGCTGCCTGTTTTTCACTGGATGAACGAGAAGCACCGACACGGTTTTACACTCTCACTGGGTCAGAGGTTAAAGGTCAGAATTAAAGGCTTTTAAACACTTTCATCTCAGTTTCATCAGGATACAGAAGATCACTGTGTGTTATAAACTGAAGCGAGTAGTGAAACGTGCTCACAGGAGGCCTGTCACTATAacacttttcactttttaatgGACGATATGTTGATCCTCAGCTGATTTACTGCGATAAATTATTTTATGgtaatttttacataatttaatgGAATtggaatattacattttttatatattctacataaataaataaaataaaaacactattcTAAATCAAATCAATGTAACAGCTCAATATCGTTAAAGGGATCTCCTCTCAACCTGCTTGGAGTCGTGGATCAGAGGACTTTTATCATATAAAGAGAGAGCTGTGGTCTGCTGTGCTGTAAATATGGATCAGGATCAGGTTAGAGATGTTGCTGTGCTGAAGCTCTGGCTGAGTTTGAGTCAGATAAGGCAATAAATAACTGAATGATGGATTGAtcacatatatatatcagaACGAGCTGTATAACGAGCTGTCTAATTAGTTCTCTAACGAGCTGTGTAACGAGCTGTGTAACGAGCCGTTTAAGGAGCTGCTGGATTgaacagtgtgaaagacttcagcagcagtaaaactgcaCTGTGTGTCTGAGAGCAGAGGAGATAATAAAGCAGCGCAGTTGTTTATTTATCGTGTGATAAATTGATAAAGTGATTATGATGACAGGCCTGCTGTTACACATTACTCCTAATACTCCAGACTGCGGCGGAtcctgatctcagatcagcagTTCTGGATTCAATGTAACGGAGAGcatttcttcctcctctttgaTTTCGAGTCTCATTAGATGTTTTTATCTGTTGGATCTGATTTTGCTGCTGATCCaggataaataattaataactcGGGTATAAACTCCCGGCGTGTCCTTCTTCCCACATCCATCCCCCCAACTGATCAACCCCACCAGATTCATCCTGCCGTCCTTCTGACACACCAGAGGACCTCCAGAGTCGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU76134 True 1803 lncRNA 0.37 2 35197445 35199268

Neighbor

gene id symbol gene type direction distance location
LOC103034472 NA coding upstream 1780 35191804 ~ 35195665 (+)
snap29 snap29,LOC107722859,LOC107560055,LOC107726963 coding upstream 108260 35083719 ~ 35089185 (+)
LOC103037259 pi4ka,LOC108440297,LOC107671001 coding upstream 114153 35039169 ~ 35083292 (+)
LOC103047196 NA coding upstream 178720 35015117 ~ 35018725 (+)
gins4 gins4,LOC107747805,LOC107698091,LOC107678389,LOC107556221 coding upstream 191725 34990826 ~ 35005720 (+)
enkd1 enkd1,LOC107670972 coding downstream 60652 35259920 ~ 35265350 (+)
polb polb coding downstream 66700 35265968 ~ 35274621 (+)
mrpl40 LOC107753002,LOC107671004,LOC107754402,LOC107559600 coding downstream 94655 35293923 ~ 35296002 (+)
gle1 gle1,LOC102792584 coding downstream 100526 35299794 ~ 35308446 (+)
LOC103031612 NA coding downstream 109357 35308625 ~ 35311487 (+)
G56459 NA non-coding upstream 20466 35171898 ~ 35176979 (+)
G56444 NA non-coding upstream 29424 35111041 ~ 35168021 (+)
G56448 NA non-coding upstream 61397 35133583 ~ 35136048 (+)
G56445 NA non-coding upstream 81689 35114985 ~ 35115756 (+)
G56437 NA non-coding upstream 104107 35090736 ~ 35093338 (+)
LOC111192732 NA non-coding downstream 18623 35217891 ~ 35218782 (+)
G56479 NA non-coding downstream 54050 35253318 ~ 35254002 (+)
G56482 NA non-coding downstream 86183 35285451 ~ 35287472 (+)
G56487 seta,LOC103031932,LOC107752982,LOC107699670,LOC108265615,LOC107754404,LOC107671021 non-coding downstream 112847 35312115 ~ 35315555 (+)
G56492 zdhhc12,LOC107560045,LOC106955948 non-coding downstream 120611 35319879 ~ 35320773 (+)
LOC103047498 NA other upstream 208160 34961800 ~ 34989285 (+)
G56414 tcf7l1,LOC107721095,LOC107556226 other upstream 445882 34713218 ~ 34751563 (+)
fgf17 fgf17,LOC103025711,LOC107698084,LOC107678395,LOC107721084 other upstream 685761 34503114 ~ 34511684 (+)
LOC103037863 adra2b,LOC108440671,LOC108264887,LOC107554404,LOC107753091 other upstream 1557368 33635152 ~ 33640077 (+)
izumo1 NA other upstream 1601627 33564828 ~ 33595818 (+)
ikbkb ikbkb,vdac3,LOC107560056,LOC107671013,LOC107754399 other downstream 27217 35226485 ~ 35272528 (+)
LOC103032256 dynll1,LOC103397138,LOC107554284,LOC107559583,LOC100698873 other downstream 76811 35276079 ~ 35284271 (+)
G56504 NA other downstream 221450 35420718 ~ 35458877 (+)
G56701 pola2,LOC107710902,LOC107657899 other downstream 756836 35956104 ~ 35964510 (+)
G57066 NA other downstream 1806005 37005273 ~ 37005798 (+)

Expression


Co-expression Network