G56479


Basic Information

Item Value
gene id G56479
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35253318 ~ 35254002 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU76155
ATTTTGGGTAGAAATGATCAGACTTGGGAACCAGGAGCCTCAAAATAGCATAAGAGTCTATCAGCAGTTCAGCTGtactgaacactgaacactgaacacgGTCAGGTAATTCTGCTGAGCTTTTTCTCCCCAACATCTCAGAGGCCCTGAGATCTAACTAATACCACATCACGCTGAGTCCTACTATAATCTGGTATTCTGGATTTACATAGTCTACAGTCATTCTGAatatactatacacacaacattatactAAAGCCCTAtatggacaggattagtttctcagggggttctgggtaattttctcttttatgttttttttttatcctctgtgattttactcccgtccagaacgatcatgtaggtgtttttctcagacgtcctctgagaaaattacaggctgaattatctactgtttttctctgaactccgtgctcctccgctaattttagtcccgtccggacgcacatctctgagttactgaacgctgtgatgtcatgtgacagagaaaagcctaaaaactcactgatcctcctgttttttcaattgcagtccgga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU76155 True 558 lncRNA 0.41 2 35253318 35254002

Neighbor

gene id symbol gene type direction distance location
LOC103034472 NA coding upstream 57653 35191804 ~ 35195665 (+)
snap29 snap29,LOC107722859,LOC107560055,LOC107726963 coding upstream 164133 35083719 ~ 35089185 (+)
LOC103037259 pi4ka,LOC108440297,LOC107671001 coding upstream 170026 35039169 ~ 35083292 (+)
LOC103047196 NA coding upstream 234593 35015117 ~ 35018725 (+)
gins4 gins4,LOC107747805,LOC107698091,LOC107678389,LOC107556221 coding upstream 247598 34990826 ~ 35005720 (+)
enkd1 enkd1,LOC107670972 coding downstream 5918 35259920 ~ 35265350 (+)
polb polb coding downstream 11966 35265968 ~ 35274621 (+)
mrpl40 LOC107753002,LOC107671004,LOC107754402,LOC107559600 coding downstream 39921 35293923 ~ 35296002 (+)
gle1 gle1,LOC102792584 coding downstream 45792 35299794 ~ 35308446 (+)
LOC103031612 NA coding downstream 54623 35308625 ~ 35311487 (+)
LOC111192732 NA non-coding upstream 34536 35217891 ~ 35218782 (+)
G56465 NA non-coding upstream 54050 35197445 ~ 35199268 (+)
G56459 NA non-coding upstream 76339 35171898 ~ 35176979 (+)
G56444 NA non-coding upstream 85297 35111041 ~ 35168021 (+)
G56482 NA non-coding downstream 31449 35285451 ~ 35287472 (+)
G56487 seta,LOC103031932,LOC107752982,LOC107699670,LOC108265615,LOC107754404,LOC107671021 non-coding downstream 58113 35312115 ~ 35315555 (+)
G56492 zdhhc12,LOC107560045,LOC106955948 non-coding downstream 65877 35319879 ~ 35320773 (+)
G56499 NA non-coding downstream 138300 35392302 ~ 35468036 (+)
G56649 NA non-coding downstream 275902 35529904 ~ 35530234 (+)
LOC103047498 NA other upstream 264033 34961800 ~ 34989285 (+)
G56414 tcf7l1,LOC107721095,LOC107556226 other upstream 501755 34713218 ~ 34751563 (+)
fgf17 fgf17,LOC103025711,LOC107698084,LOC107678395,LOC107721084 other upstream 741634 34503114 ~ 34511684 (+)
LOC103037863 adra2b,LOC108440671,LOC108264887,LOC107554404,LOC107753091 other upstream 1613241 33635152 ~ 33640077 (+)
izumo1 NA other upstream 1657500 33564828 ~ 33595818 (+)
LOC103032256 dynll1,LOC103397138,LOC107554284,LOC107559583,LOC100698873 other downstream 22077 35276079 ~ 35284271 (+)
G56504 NA other downstream 166716 35420718 ~ 35458877 (+)
G56701 pola2,LOC107710902,LOC107657899 other downstream 702102 35956104 ~ 35964510 (+)
G57066 NA other downstream 1751271 37005273 ~ 37005798 (+)
agtpbp1 agtpbp1 other downstream 3855242 39109244 ~ 39153476 (+)

Expression


Co-expression Network