G56512


Basic Information

Item Value
gene id G56512
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 34874564 ~ 34876645 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU76224
ATAAAACAAAAGGAGCTTTATTCACTAATGCCAACACCTCCAAGGTTAGTTCAGCAGTTCGGAGAGCATGAGGAGAACGCTGAGTCTTCAGCACAAACTACAGAACAGTGGACGATAATTAGCAAGGAGAGGTCACCATGGCTGTGTATGTGGGttcactgtgtatatatatttatatatatatttatgtttgtgtgtatatgtttctGTGTGGGTGTACACATAGCAGGTACAGTACCAATTCAGTGAGCTGCTCTCCTTGCAGAAAGAAAACCTTTAACCCTTTTTAAGggcaaaaacaaaaagcaacaaataaaaatatctgaatgaGATTTCTTTACAGTACAGTTTCTGGTGGGTTATACATTGACGGTTAAGGCTGAGAGTTCCTTTTTTATTGAGGATGCTGGGAGAGGTGAGagaagggaaaagagagagagaaatcccTGATATCTTGCAAAATGGCTGTGgaaaagtgtgagtgtgtgtgaagagtgcAAAGCAATGCCGTGTACCGCCGCTGTGTGACCTGTTCCAGCACTGATCGAGTTTTTCTCTCCTGGAGCCACTTCTGACCCCACCAAACTCCCTGTCAGAGAggaacatacatacataactgCCACTGAATGAATTCCAGCTGAATGGTTGGAAGATGACAAATAAATACCAAAAATATTAAGACAAAAACACAAGCGACATGAGAAATGAGATTAAAGGAAAAGTTCAGGGAAAAAAGTACACaatttatctttttaatatgTACCGGTAGTTGATTTGAGGTGCGAAGCTAAATCGAGATCAACACAGATATAAAACTGTCACCCATACCCACAACTTTGAGACCTGATCCAATCACCTTTACTGATAATTTTGAAGCCAAAtgttgtaaaagaaaaactatgtattttttgtatcagGTCAGGAGAGAGGTCTTAAAGAAGTGAGTCTATAGTCCCCAGTTGAGCCAGATAATCTGtaaacctaaaccaaaccatAATCTCTAACTGAATTGATAATGTGGTTTTTGACACTCTATGACTCACTGTTTTCTATAAACAAGTGCAAAGCTGTAACAGATGGTTGAGGTGTTGCAATAAGAACACGGATCTTACAGTTATGACGAATGTgctaatagaaatgcttcaaaaaattaattcattttacactATCTTTCATTAAAATGTAAGGTGTTAGTTTGCAGATACAAgattttacacaataaaaatgCTGGATAACATCCAAAGTATTAAATCCATTGACAAGTGAACTGAATAATATTAATGATCTGGTTCACATATTAGGCATCAGCTGAACGGtcaagtcttaaagtcttaaagtTCGTGTTGGAATCAAATAACTACCTAATTACTCCGAGAAAAGAGACCAACTGAACAAGTGACAGATCCACAGGCAGCCAAGGCTCACTGATCTCACAATATACAGGACTTGTTGCCAGATACAACAGGACACCTTCAAAGATCTTGTAAAGTCTATGCCTCAATGGCCTAGAGCTGTTTTGGCAGCACAATTGGGCAGCACAAAGGGTCTACACaagtctgcatgtttaaatagaCAGTAGTGAGCAATACAgtctcagaaaccacaaaaGCAAACATATATTctagaacacacaaacacagcatgtTATGGATGATCATCTACATTCTAATATAGGAGGTGAAACTTTGCCAATTTCGTTTTTTCCCCAGAACTACTCCTTTAATTTGACCACAGTGATAACAAAATGCAGCCTAGCGCTGAGAAATGTCATCATGTGCAGAACCAAAGAGAAAAGCAGCAAATGTTGGAGTTGCTCTGTCTGCTAGGACAGGAGCTTCATTCACGTACATCGTACATTCAAAAGTGCCCTGAACATCCACCAATCAGATTACAGACATCCCCCCCAGTACAGCCAACCGTTAAAACTCCAAAGGCATGGTTAAGCACTGAAGACTTGATCTGATGAACAAAGACCACTTCTCATGACAGCACATATTATGATAACGGTGTTATGAGGTAGGGATGCATGATGATATTGGAATTATGCCATCAATATTTTTCAAGTTTTACCGGAGTGTTTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU76224 True 2082 lncRNA 0.39 1 34874564 34876645

Neighbor

gene id symbol gene type direction distance location
LOC103022374 tcf7l1,LOC108265410,LOC107556226,LOC106580381 coding downstream 122711 34707458 ~ 34751853 (-)
tgoln2 LOC108426653 coding downstream 188448 34677456 ~ 34686116 (-)
stambp stambp,LOC108426652 coding downstream 199084 34666351 ~ 34675480 (-)
LOC103022681 NA coding downstream 234761 34631304 ~ 34639803 (-)
LOC103024249 LOC108426649 coding downstream 257443 34601412 ~ 34617121 (-)
LOC103027077 NA coding upstream 56041 34932686 ~ 34939352 (-)
LOC103046374 cox5b,LOC103046374,LOC107602047,LOC108426657,LOC106567989,LOC106563057,LOC107558099 coding upstream 109428 34986073 ~ 34989263 (-)
serpind1 serpind1,LOC107738496,LOC107698014,LOC107560052,LOC107671000,LOC107722856,LOC107559590 coding upstream 178956 35055601 ~ 35060999 (-)
LOC103038635 slc25a1b,slc25a1,LOC108412497,LOC107754397,LOC107657208,LOC107722854,LOC107670994,LOC105898475 coding upstream 238865 35115510 ~ 35130946 (-)
LOC103043388 LOC108412499,LOC107559593,LOC107754396 coding upstream 259106 35135751 ~ 35175961 (-)
G56507 NA non-coding downstream 163641 34709246 ~ 34710923 (-)
G56349 NA non-coding downstream 453363 34408840 ~ 34421201 (-)
G56336 NA non-coding downstream 471046 34397594 ~ 34403518 (-)
G56332 NA non-coding downstream 494753 34346112 ~ 34379811 (-)
G56333 nr6a1,nr6a1a,LOC107721088,LOC107698081,LOC107753334,LOC107678448 non-coding downstream 509213 34346316 ~ 34365351 (-)
G56519 NA non-coding upstream 36601 34913246 ~ 34913968 (-)
G56532 NA non-coding upstream 94604 34971249 ~ 34991135 (-)
G56548 NA non-coding upstream 159290 35035935 ~ 35036274 (-)
G56562 NA non-coding upstream 194671 35071316 ~ 35071759 (-)
G56569 NA non-coding upstream 204358 35081003 ~ 35083273 (-)
LOC103023237 NA other downstream 1696914 33149074 ~ 33177650 (-)
LOC103021360 LOC108440818,LOC107659619,LOC108265551,LOC107726210,LOC107553829,LOC107684495 other downstream 2072404 32772027 ~ 32802160 (-)
LOC103043418 arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626 other downstream 3134343 31731464 ~ 31740221 (-)
LOC103027498 LOC108411246,LOC106585447 other downstream 3183756 31635481 ~ 31690808 (-)
LOC103046862 LOC108410878 other downstream 4940134 29896515 ~ 29934430 (-)
LOC103038119 LOC108412501,LOC107754395,LOC107671045 other upstream 214085 35090730 ~ 35108420 (-)
acaa2 acaa2,LOC107671002 other upstream 408777 35285422 ~ 35293421 (-)
c6h22orf39 NA other upstream 419696 35296341 ~ 35299750 (-)
LOC103038782 slc25a25a,LOC108430373,LOC107754405,LOC107671014,LOC107699669,LOC107560063,LOC107559565,LOC107752985 other upstream 445340 35321985 ~ 35332434 (-)
G56638 NA other upstream 544185 35420830 ~ 35458874 (-)

Expression


Co-expression Network