G56569


Basic Information

Item Value
gene id G56569
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35081003 ~ 35083273 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU76304
ttaaacatctCAGGCTGTATCCATCCAAAAACAGTGCAGGATAGAAAAGATTCAGAAAAATGACAAACATGTAAACGAGTgtacaaatattaaaatcactTCACAATCTGTTCAACACTGAGGCACATACTGTAAACAAGCTGTGATTGGTTAAATAGGACCTCGGGCTGATCTGGTTCTGATTGGTGTGTATCTAACAAATTTTCACAGGCTGAAATAGTCTGTAATTCTCACCCAGCAGGGCAGGATGGAGTAtttctaaaaccttaaaaaaatttatatgattttattaatcACTGATTTAAAGACCTTCAGTCTTGGTGAACAATGGTTCACAACTGAACACAaacttagtgcagttagcaagTTACAAAGCCATCAGTCAGATATGATGCACAGTATTTTATAGACATATCaatgtacatatttttatatttaaattaatgtaaatctcttattaattatatttagtgCTCGTATTTTAGAAAAAGCAATTTCAATCTCGAAAGAGAAGCAAGAAACTGGGATTTCTTACAGCAAGACTCAAATGCCAGGTGTCGTCATAGCAAGtgcacagaaaacagcattcagTGATCAATCGTATGTTTTGAGACTTTAAAGAGATGAAAGCTACAAACTCTTGATAAGTCTGTAATGTTGAGGCATAATAAACTTCAGTGGGTAGCACTTTATTTCACAGTATGTGAGTAATTACTATTTAATAGGTAAATAGTAAGAAGCAACGCAATGGTAACTACTAGTACTGGCAACTGAtgctctgtgattaattaatatttcttaatcattttcatcacttttattattattatattttatattttacatattatattttagcACAAATCtcttcttatatattttctgcaCTGGCGTTTTTTAAGTCAAAAAATGACCGATTAGCCCATTAGCTAACGGGCAATGCTAACTtttccgagctgaattaatggctcatgtttgataacagataaatggagctgtgctggttttggggtttgataacagattaAGTAGTAACTGTTCTCTTATGGTCTTATTCAGAatgtagatacagtatatactagTGAATTTGAATATTTAACGTGTATGAAGCATGTGTCCTAAAACCTGGCAGCTGGTAGTTTTACTAGTAGTTACCACTGCCTTACTAAAGTACCGTAAAATCACTAGTATTGTTACCTTTAACttatttacatattacatactAGTCACTTACCATACTGTAGAATAAAGTGCTGCCCTTTACTGCGCTGTTTTTCTCACACACTGAAGCCATGCAGTTAACAGTACATCAGCAGGGCAGCGCGGTTTCAACCAATAaccattttaaccatttctctcttttgagagaaatcatttattttatatgcttTTATGATTAAAGTCTAAAAATATAAGTCTACATGaggcacattttattttttttatgtaaaaagttgtcaaaatgaaaaaaaaaaaagaatatctgAAAGGGAGAAATGGTTCATATATGGATATTCATTTGAAGAACtcaataaaagattaaaaacttGCAAGTGCATTACAGGCGTATAAAGTGCAGAGAGTACTGAACAAACAGGCAATCAAAATTCCACAACAAGGGAGGCAAACATGTTAAAACTAGGGGTGggatcacagggcatctcacgatacAATATCACGATACACTGCCCACAATAACGATAAGATCACGATACTTTGATTCTGTGATAGTCGATAAATCACAACACAATTCTATGATCTTTCACATCGTCTGTGTTtctgaagagaataaaatactcctaaataatcaaataccaggaattatagatttattggtTCAGTTTTACACAATTTAGCAACCGATATTCTTCACTGAAGGTTTTGTTAACCCTATTCATtagattatagcgccaccatgtggaatgaagcagtaactttagtaactCCTCTAATTGAGGGCGGGGCTTAGGGGGTTTAGAGCGCctgtttcaataaataaaaaaaacccatattTGATGAATAATGTATCGCAAACAAAACAATAGAATATattgattttgatattttgtcccacccctatttAACACTGTGCATTAACACTctatgtgcgcacacacacacacacacacacagatgtaaCAGTTCTTCCATAAAACATACATGAGATTTTAGTAAGGGTCCAGCTGTAACTGTACTGTCGGCTGTCAGCTCAGTACGGGATTTGGTTCTGGTAATACTGGATCAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU76304 True 2245 lncRNA 0.34 2 35081003 35083273

Neighbor

gene id symbol gene type direction distance location
serpind1 serpind1,LOC107738496,LOC107698014,LOC107560052,LOC107671000,LOC107722856,LOC107559590 coding downstream 20004 35055601 ~ 35060999 (-)
LOC103046374 cox5b,LOC103046374,LOC107602047,LOC108426657,LOC106567989,LOC106563057,LOC107558099 coding downstream 91740 34986073 ~ 34989263 (-)
LOC103027077 NA coding downstream 141651 34932686 ~ 34939352 (-)
LOC103022374 tcf7l1,LOC108265410,LOC107556226,LOC106580381 coding downstream 329150 34707458 ~ 34751853 (-)
tgoln2 LOC108426653 coding downstream 394887 34677456 ~ 34686116 (-)
LOC103038635 slc25a1b,slc25a1,LOC108412497,LOC107754397,LOC107657208,LOC107722854,LOC107670994,LOC105898475 coding upstream 32237 35115510 ~ 35130946 (-)
LOC103043388 LOC108412499,LOC107559593,LOC107754396 coding upstream 52478 35135751 ~ 35175961 (-)
LOC103040650 NA coding upstream 94885 35178158 ~ 35189957 (-)
plat NA coding upstream 115207 35198480 ~ 35216765 (-)
vdac3 vdac3,LOC107754399,LOC107560056 coding upstream 163520 35246793 ~ 35259232 (-)
G56562 NA non-coding downstream 9244 35071316 ~ 35071759 (-)
G56548 NA non-coding downstream 44729 35035935 ~ 35036274 (-)
G56532 NA non-coding downstream 89868 34971249 ~ 34991135 (-)
G56519 NA non-coding downstream 167035 34913246 ~ 34913968 (-)
G56512 NA non-coding downstream 204358 34874564 ~ 34876645 (-)
G56580 NA non-coding upstream 93165 35176438 ~ 35176979 (-)
G56600 polb non-coding upstream 182620 35265893 ~ 35272290 (-)
G56602 NA non-coding upstream 192674 35275947 ~ 35278890 (-)
G56620 NA non-coding upstream 267552 35350825 ~ 35367301 (-)
G56631 NA non-coding upstream 301505 35384778 ~ 35460652 (-)
LOC103023237 NA other downstream 1903353 33149074 ~ 33177650 (-)
LOC103021360 LOC108440818,LOC107659619,LOC108265551,LOC107726210,LOC107553829,LOC107684495 other downstream 2278843 32772027 ~ 32802160 (-)
LOC103043418 arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626 other downstream 3340782 31731464 ~ 31740221 (-)
LOC103027498 LOC108411246,LOC106585447 other downstream 3390195 31635481 ~ 31690808 (-)
LOC103046862 LOC108410878 other downstream 5146573 29896515 ~ 29934430 (-)
LOC103038119 LOC108412501,LOC107754395,LOC107671045 other upstream 7457 35090730 ~ 35108420 (-)
acaa2 acaa2,LOC107671002 other upstream 202149 35285422 ~ 35293421 (-)
c6h22orf39 NA other upstream 213068 35296341 ~ 35299750 (-)
LOC103038782 slc25a25a,LOC108430373,LOC107754405,LOC107671014,LOC107699669,LOC107560063,LOC107559565,LOC107752985 other upstream 238712 35321985 ~ 35332434 (-)
G56638 NA other upstream 337557 35420830 ~ 35458874 (-)

Expression


Co-expression Network