G56580


Basic Information

Item Value
gene id G56580
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35176438 ~ 35176979 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU76318
TCTGATTGACAGCAAGAGTCAGTCTAAACACACCACTTATCTCACACACCCTGCAcatccctaacacacacacacacacacacccacacacacccacacacacatacacacacacacaccaaCATATGTATGTACACATGCAGATGTACTCTCTCacataaataacacattttctctctctcacactaaacctcaatactcactatacacaaATGTATGCATGTTATGCTATTTTTCACTATTTCTTCTAAATGTTTATTGAATATAGATTCTAATGTATAAtgcatgttattttattgttttaataaactaaatgtaaacGCTGTATACTGCAGTGTGTCTTTACTGCTAAATAAAGCTCATCATCAACAACATGCAGGTGTTGGAACTGTTCATCAAAAACTTTTCATTAATTATTTAGGCAGAATGTACATTTCATACGTGATAAAACTCTGTAAAGTACACGACTAAATGACTATTTGATAAGTGTGCTGTAAAGTAAAGTATTT

Function

GO:

id name namespace
GO:0022857 transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU76318 True 509 lncRNA 0.34 2 35176438 35176979

Neighbor

gene id symbol gene type direction distance location
LOC103043388 LOC108412499,LOC107559593,LOC107754396 coding downstream 477 35135751 ~ 35175961 (-)
LOC103038635 slc25a1b,slc25a1,LOC108412497,LOC107754397,LOC107657208,LOC107722854,LOC107670994,LOC105898475 coding downstream 45492 35115510 ~ 35130946 (-)
serpind1 serpind1,LOC107738496,LOC107698014,LOC107560052,LOC107671000,LOC107722856,LOC107559590 coding downstream 115439 35055601 ~ 35060999 (-)
LOC103046374 cox5b,LOC103046374,LOC107602047,LOC108426657,LOC106567989,LOC106563057,LOC107558099 coding downstream 187175 34986073 ~ 34989263 (-)
LOC103027077 NA coding downstream 237086 34932686 ~ 34939352 (-)
LOC103040650 NA coding upstream 1179 35178158 ~ 35189957 (-)
plat NA coding upstream 21501 35198480 ~ 35216765 (-)
vdac3 vdac3,LOC107754399,LOC107560056 coding upstream 69814 35246793 ~ 35259232 (-)
rpl6 rpl6,LOC107699672,LOC107671003,LOC107559598 coding upstream 102844 35279823 ~ 35284290 (-)
LOC103031932 seta,LOC103031932,LOC107752982,LOC107699670,LOC108265615,LOC107754404,LOC107671021 coding upstream 133710 35310689 ~ 35315573 (-)
G56569 NA non-coding downstream 93165 35081003 ~ 35083273 (-)
G56562 NA non-coding downstream 104679 35071316 ~ 35071759 (-)
G56548 NA non-coding downstream 140164 35035935 ~ 35036274 (-)
G56532 NA non-coding downstream 185303 34971249 ~ 34991135 (-)
G56519 NA non-coding downstream 262470 34913246 ~ 34913968 (-)
G56600 polb non-coding upstream 88914 35265893 ~ 35272290 (-)
G56602 NA non-coding upstream 98968 35275947 ~ 35278890 (-)
G56620 NA non-coding upstream 173846 35350825 ~ 35367301 (-)
G56631 NA non-coding upstream 207799 35384778 ~ 35460652 (-)
G56645 NA non-coding upstream 260854 35437833 ~ 35440647 (-)
LOC103038119 LOC108412501,LOC107754395,LOC107671045 other downstream 68018 35090730 ~ 35108420 (-)
LOC103023237 NA other downstream 1998788 33149074 ~ 33177650 (-)
LOC103021360 LOC108440818,LOC107659619,LOC108265551,LOC107726210,LOC107553829,LOC107684495 other downstream 2374278 32772027 ~ 32802160 (-)
LOC103043418 arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626 other downstream 3436217 31731464 ~ 31740221 (-)
LOC103027498 LOC108411246,LOC106585447 other downstream 3485630 31635481 ~ 31690808 (-)
acaa2 acaa2,LOC107671002 other upstream 108443 35285422 ~ 35293421 (-)
c6h22orf39 NA other upstream 119362 35296341 ~ 35299750 (-)
LOC103038782 slc25a25a,LOC108430373,LOC107754405,LOC107671014,LOC107699669,LOC107560063,LOC107559565,LOC107752985 other upstream 145006 35321985 ~ 35332434 (-)
G56638 NA other upstream 243851 35420830 ~ 35458874 (-)
G56887 pxn,pxnb,LOC107748058 other upstream 589791 35766770 ~ 35767677 (-)

Expression


Co-expression Network