G56600 (polb)


Basic Information

Item Value
gene id G56600
gene name polb
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35265893 ~ 35272290 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU76350
aaggcaaatttatGTCCATACgagttttaaaacaaaaatccaaaaatcaactaaatctatcattaaaattgattatagttgGTCTAAAATGGGTCAGATTAAAATGCTGACGcataatctttaataataataaaatgtgagtaAGATCCTGAGAGCTGTATTGTTTAGaagctaaattactaaattaactctgagctgattgatgtatttatagctcaaaatagattttctccatcaataaagtgaaacacaaagatttgcaGATTAAATTTTCATGaatttctgggtatttttatttttccaaaacttatccaggacTGGAAATTACCATTTTAAATTTCCaggacttttccaggtttttaatgAGCATATGAACCCTGACTCGAGCTATAAGTTGTGCCAATATAACACATTACAGCACTCGCTCTActgtattattgattaattatctatagtagtattaataattattaatagtttTTAGTACTGGCTCATGCAATGAACACTGAATAACCAGTAAGAGCTGCTCTTTCCTGCACCAGAGAGTAAGCTGCtgtctgtccttttttttttgagctacaGACAAAGATGCTTCTGTTTGTTCTCCATTGTTCACCAATTTCTTGTTCTCGTCCCCCTGGAGCAGAACTGCACACACTCTTCAAAATAATCAGCCCAGTTACAGCTTTATAAATAGAGACTGCAGGATTCTCAGTCTTTACAGAGTAATAACAGATtatagacagattatatctgtttttGCTCAGCATTAATGTcttaaaaatgtactaaaaaacacaaaaaagctgTTACTTCTTTCTTCATATCTTACCAGTGACGCCTAGCGGACGGATAGTGTACTCATTCAGAGTAAAGCCTTTCTCCAGAGCGAGGGTTCTCATGTTCTTATTGAATATATCACTCCCAGTGAAGTACAGCACACCACAGTAATACTGATCCTTAGGAATCAGTCTGATATCAATACGACGGTGATCACGATCCTcgtcctcctcatcctccttgTGCAGCTGACACACACCCATGAACTTAGTGTCTCCTTTGGAAAGAGTATCAGTAATAAAGCCAATCgactccaggtgttccaccacAGCATGAAGCAGTTTCGGTTGTTTCTCAGACTCTGAAGTAAAGTCCGGGTGAGTCAGCAGGATATCAATATCACCACTCGATTCCGCGCCTCGTCGGTAGCTGCCACAGATGGTGCCAATGTACTCCGAGTCCAACTCCTCTAATTCTTGTAATATCAGAGCCTCCATTTTCTGCATCTCTGAGCGGGGAATTCTCTTCTCAAATTCTTCAAAGTATTTAAGACCAATTTGCTGATGGTGATTCAGTTTGTGCTCAATTTTCTTCAGATCTTCCAAAGTTTTTACTCCTTCCTCAAAGAACTTTCTAGCAGCAGCCGGGCCGATTCCAGTCACTCTAGTTAAAAAGTTAATAGATGAGCTGGTGTCGTCACTGCGAATCTTCTCCAGTTTACGGAGTTTCCCTGTGGATAAAAACTCATCTATTTTCTCAGCGATCTTTGCACCAACTCCATCCAGCTTTTTTGCTTCAGTGCCACTTTTGATTTTTTGTGGGTATTTAGCAATCACAGAGGCAGCTTTCCTGTAGGCGTTGTATTTATGAATGGCCCTGTTGACATTTCTTTCATAATTGGCCAAttCGATGAGAAAGTCGGTGATTCCCTCGTTCAGGGTCTCCTGCGGGGCTTTGCGCTTACTCATGTTTATCTGCGGTTCTGTGCGGTGTTTATCTTGGGGTTTATTCGCTGTAATCTGTACTGTGGGGTAGTTTGAGGGTGAAACGCTGGAGACAAAGCTGTGGGTCTGCAGCTGCTCTCCACAGATAAGCCCCTCCCACTACTTACACGTCACCACTAGACTCGCCAATTGGGACAAAGCGAATCTACATAAtgcagtgtatgtatatatata

Function

symbol description
polb Enables DNA-directed DNA polymerase activity. Predicted to be involved in base-excision repair and double-strand break repair via nonhomologous end joining. Predicted to act upstream of or within DNA biosynthetic process; DNA repair; and DNA replication. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human POLB (DNA polymerase beta).

NR:

description
PREDICTED: DNA polymerase beta

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU76350 True 1958 lncRNA 0.40 13 35265893 35272290

Neighbor

gene id symbol gene type direction distance location
vdac3 vdac3,LOC107754399,LOC107560056 coding downstream 6661 35246793 ~ 35259232 (-)
plat NA coding downstream 49128 35198480 ~ 35216765 (-)
LOC103040650 NA coding downstream 75936 35178158 ~ 35189957 (-)
LOC103043388 LOC108412499,LOC107559593,LOC107754396 coding downstream 89932 35135751 ~ 35175961 (-)
LOC103038635 slc25a1b,slc25a1,LOC108412497,LOC107754397,LOC107657208,LOC107722854,LOC107670994,LOC105898475 coding downstream 134947 35115510 ~ 35130946 (-)
rpl6 rpl6,LOC107699672,LOC107671003,LOC107559598 coding upstream 7533 35279823 ~ 35284290 (-)
LOC103031932 seta,LOC103031932,LOC107752982,LOC107699670,LOC108265615,LOC107754404,LOC107671021 coding upstream 38399 35310689 ~ 35315573 (-)
LOC103031304 zdhhc12 coding upstream 43992 35316282 ~ 35320788 (-)
LOC111192733 NA coding upstream 95359 35367649 ~ 35370960 (-)
LOC111192675 LOC107754426,LOC107670998,LOC107699638,LOC107560048,LOC107753005,LOC105014160 coding upstream 118518 35390808 ~ 35395244 (-)
G56580 NA non-coding downstream 88914 35176438 ~ 35176979 (-)
G56569 NA non-coding downstream 182620 35081003 ~ 35083273 (-)
G56562 NA non-coding downstream 194134 35071316 ~ 35071759 (-)
G56548 NA non-coding downstream 229619 35035935 ~ 35036274 (-)
G56532 NA non-coding downstream 274758 34971249 ~ 34991135 (-)
G56602 NA non-coding upstream 3657 35275947 ~ 35278890 (-)
G56620 NA non-coding upstream 78535 35350825 ~ 35367301 (-)
G56631 NA non-coding upstream 112488 35384778 ~ 35460652 (-)
G56645 NA non-coding upstream 165543 35437833 ~ 35440647 (-)
G56656 NA non-coding upstream 271421 35543711 ~ 35543995 (-)
LOC103038119 LOC108412501,LOC107754395,LOC107671045 other downstream 157473 35090730 ~ 35108420 (-)
LOC103023237 NA other downstream 2088243 33149074 ~ 33177650 (-)
LOC103021360 LOC108440818,LOC107659619,LOC108265551,LOC107726210,LOC107553829,LOC107684495 other downstream 2463733 32772027 ~ 32802160 (-)
LOC103043418 arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626 other downstream 3525672 31731464 ~ 31740221 (-)
LOC103027498 LOC108411246,LOC106585447 other downstream 3575085 31635481 ~ 31690808 (-)
acaa2 acaa2,LOC107671002 other upstream 13132 35285422 ~ 35293421 (-)
c6h22orf39 NA other upstream 24051 35296341 ~ 35299750 (-)
LOC103038782 slc25a25a,LOC108430373,LOC107754405,LOC107671014,LOC107699669,LOC107560063,LOC107559565,LOC107752985 other upstream 49695 35321985 ~ 35332434 (-)
G56638 NA other upstream 148540 35420830 ~ 35458874 (-)
G56887 pxn,pxnb,LOC107748058 other upstream 494480 35766770 ~ 35767677 (-)

Expression


Co-expression Network