G56602


Basic Information

Item Value
gene id G56602
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35275947 ~ 35278890 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU76352
AACGGTGAAGCCACATCAATGTTTATTTAAGAGACACGCTAGAGGTTTATGTGTAACAATAAGGCCAACATACTCATATCAACAGTAATATATAACCAACCCTGAGTGTGTGTCTCATTATTGGTGCCATCCATCTTCCAATCATCATCATTTACCAAATCACCTCCAATTTCTTGATCTTGGTTGATCTAGATCTTTCTCAGGCTCACAGCACCACGTCAGTGTCCAGAAGAAACCAGTCCTCGCCTCCACCCAGACCGCCCAACCATTTcgctttaattaaaaaatccaAAGGGACATAAAATGTTCAACTTGTgtatagaaaacaaaaataaatacatgttttttcctCATCTCTCACAAACATTtcctttaaacaaaacaaaaaaaaaagaacaaaaggagaagcagccaagagaaGGCAGGTCCCAGAACAGGAATGATCGGCCTTTCTGTACAGTCAGTATTTAACGGTTAGCTGACGGTGGGCCGTCTCAGCCGGACTTGAAGAGCAGAATTGCCACCTGGCCCAGGTAGAAGTAGATGAAGTGCTTGGTCTCGTGGGTGACGTAGCTGCCGAAGTTCCTGCCCACGATGCAGTGCCAGGTGGGGTTGTACTTCTTGTCAAACTCCTTTTGATGTAGGCAGCGATGTCCTTCTCGATGTTGTATTTCTCCAGAGCCTGAGTGGCACATTCAACAGCATCCTGCTGCATCTCCTCAGACATGTCCGCATTTTTGATCACTGCCTTCCTGTCAGACATGGTTCCTCtgaaaatataaagaataaccAGTTTGTTATAAAGCACTTATTATGCTAatttggaaaatg
>TU76354
AACGGTGAAGCCACATCAATGTTTATTTAAGAGACACGCTAGAGGTTTATGTGTAACAATAAGGCCAACATACTCATATCAACAGTAATATATAACCAACCCTGAGTGTGTGTCTCATTATTGGTGCCATCCATCTTCCAATCATCATCATTTACCAAATCACCTCCAATTTCTTGATCTTGGTTGATCTAGATCTTTCTCAGGCTCACAGCACCACGTCAGTGTCCAGAAGAAACCAGTCCTCGCCTCCACCCAGACCGCCCAACCATTTcgctttaattaaaaaatccaAAGGGACATAAAATGTTCAACTTGTgtatagaaaacaaaaataaatacatgttttttcctCATCTCTCACAAACATTtcctttaaacaaaacaaaaaaaaaagaacaaaaggagaagcagccaagagaaGGCAGGTCCCAGAACAGGAATGATCGGCCTTTCTGTACAGTCAGTATTTAACGGTTAGCTGACGGTGGGCCGTCTCAGCCGGACTTGAAGAGCAGAATTGCCACCTGGCCCAGGTAGAAGTAGATGAAGTGCTTGGTCTCGTGGGTGACGTAGCTGCCGAAGTTCCTGCCCACGATGCAGTGCCAGGTGGGGTTGTACTTCTTGTCAAACTCCTTTTTTGATGTAGGCAGCGATGTCCTTCTCGATGTTGTATTTCTCCAGAGCCTGAGTGGCACATTCAACAGCATCCTGCTGCATCTCCTCAGACATGTCCGCATTTTTGATCACTGCCTTCCTGTCAGACATGGTTCCTCGGTATTCCGGCTCCACACAGCGAGTAGAACAGTAAATGAATCTCTCTGAGCGCCGCTGCCGCTGCTGAACTCCCGCTAACTGGTTGACTGAAAGTAAATGTGGGTGTGTGGCCGACTACTCGTTGTGCTCACTCTCGCGCGCCATTGGCTGGCCGTTGCCTCCGCGCTCTTGCCATTGGTCCGAATCGCAGCGTTTTCTCCACAGTTTACTCCAGCATTTTATTTCAGACCATGATGCTCTGCGG

Function

GO:

id name namespace
GO:0032501 multicellular organismal process biological_process
GO:0009790 embryo development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU76352 False 831 lncRNA 0.43 2 35277921 35278890
TU76354 True 1018 lncRNA 0.47 3 35275947 35278890

Neighbor

gene id symbol gene type direction distance location
vdac3 vdac3,LOC107754399,LOC107560056 coding downstream 16715 35246793 ~ 35259232 (-)
plat NA coding downstream 59182 35198480 ~ 35216765 (-)
LOC103040650 NA coding downstream 85990 35178158 ~ 35189957 (-)
LOC103043388 LOC108412499,LOC107559593,LOC107754396 coding downstream 99986 35135751 ~ 35175961 (-)
LOC103038635 slc25a1b,slc25a1,LOC108412497,LOC107754397,LOC107657208,LOC107722854,LOC107670994,LOC105898475 coding downstream 145001 35115510 ~ 35130946 (-)
rpl6 rpl6,LOC107699672,LOC107671003,LOC107559598 coding upstream 933 35279823 ~ 35284290 (-)
LOC103031932 seta,LOC103031932,LOC107752982,LOC107699670,LOC108265615,LOC107754404,LOC107671021 coding upstream 31799 35310689 ~ 35315573 (-)
LOC103031304 zdhhc12 coding upstream 37392 35316282 ~ 35320788 (-)
LOC111192733 NA coding upstream 88759 35367649 ~ 35370960 (-)
LOC111192675 LOC107754426,LOC107670998,LOC107699638,LOC107560048,LOC107753005,LOC105014160 coding upstream 111918 35390808 ~ 35395244 (-)
G56600 polb non-coding downstream 3657 35265893 ~ 35272290 (-)
G56580 NA non-coding downstream 98968 35176438 ~ 35176979 (-)
G56569 NA non-coding downstream 192674 35081003 ~ 35083273 (-)
G56562 NA non-coding downstream 204188 35071316 ~ 35071759 (-)
G56548 NA non-coding downstream 239673 35035935 ~ 35036274 (-)
G56620 NA non-coding upstream 71935 35350825 ~ 35367301 (-)
G56631 NA non-coding upstream 105888 35384778 ~ 35460652 (-)
G56645 NA non-coding upstream 158943 35437833 ~ 35440647 (-)
G56656 NA non-coding upstream 264821 35543711 ~ 35543995 (-)
G56678 NA non-coding upstream 273946 35552836 ~ 35553987 (-)
LOC103038119 LOC108412501,LOC107754395,LOC107671045 other downstream 167527 35090730 ~ 35108420 (-)
LOC103023237 NA other downstream 2098297 33149074 ~ 33177650 (-)
LOC103021360 LOC108440818,LOC107659619,LOC108265551,LOC107726210,LOC107553829,LOC107684495 other downstream 2473787 32772027 ~ 32802160 (-)
LOC103043418 arpc5la,arpc5l,LOC108411248,LOC107571143,LOC108265305,LOC107550963,LOC107753090,LOC107676626 other downstream 3535726 31731464 ~ 31740221 (-)
LOC103027498 LOC108411246,LOC106585447 other downstream 3585139 31635481 ~ 31690808 (-)
acaa2 acaa2,LOC107671002 other upstream 6532 35285422 ~ 35293421 (-)
c6h22orf39 NA other upstream 17451 35296341 ~ 35299750 (-)
LOC103038782 slc25a25a,LOC108430373,LOC107754405,LOC107671014,LOC107699669,LOC107560063,LOC107559565,LOC107752985 other upstream 43095 35321985 ~ 35332434 (-)
G56638 NA other upstream 141940 35420830 ~ 35458874 (-)
G56887 pxn,pxnb,LOC107748058 other upstream 487880 35766770 ~ 35767677 (-)

Expression


Co-expression Network