G56638


Basic Information

Item Value
gene id G56638
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35420830 ~ 35458874 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU76401
tgtggggtatgtgtggtgtggaatgtgtgtaaggtgtggtgtggagtgtgtgtggtgtggggtgtgtgtagtgttgtattGGTTCTGGTGTGGGTTGTGTTCAGCAGTCTCTTCTCCATACAGATACAGTACTGAGGAGCAGGGCAGAGAGGGGGGCCGTGCGCAGGATCGgctggtgtgtgtgagatggcCAACATTCcgcccattcattcctatggggaaAGTTCGTACGATAATTTTACGAAAACCGTAAATCGTATCGGTGAGATCAGCATATCGTCTGAAACGTCTCTGCAAGTTCTGTATGTCTTGTGAATTTCGTGGTTCTAGCTCGAAAATTGT
>TU76403
ggagtgtgtgtggtgtggggtatgtgtggtgtggagtgtgtggggtggagtgtgtttggtgtggggtatgtgtggtgtggaatgtgtgtagtgtggggtgtagactgtgtgtggtgtcgggtgtgtgtgtggtgtggactgtggagattgtgtggtgtggagtatgtgtggtgtggaagtGAGTGTGGGGAGTGGACTGTGTGTCGTGTGGggtgtgtggtgtggggtgtgtgtagtgttgtattGGTTCTGGTGTGGGTTGTGTTCAGCAGTCTCTTCTCCATACAGATACAGTACTGAGGAGCAGGGCAGAGAGGGGGGCCGTGCGCAGGATCGgctggtgtgtgtgagatggcCAACATTCcgcccattcattcctatggggaaAGTTCGTACGATAATTTTACGAAAACCGTAAATCGTATCGGTGAGATCAGCATATCGTCTGAAACGTCTCTGCAAGTTCTGTATGTCTTGTGAATTTCGTGGTTCTAGCTCGAAAATTGT
>TU76404
TAACTAGAAAAGGCAAagttcgtgaacgaactttaagttggcttgtcaAATAGTTActaagttgtgtagtgtgtgtgtggtgtggagtgtgtgtggtgtggagtgggttgtggagtgtgtttggtgtggggtatgtgtggtgtggaatgtgtgtagggtgtggtgtggagtgtgtgtagtgtggggtgagTTGTGTGTAtcaggtgtggagtgtgtgtgttgtggagtgtgtggtgtggtgtgtagagagtgtggtgtggtgtgtggagtatgtgtggtgtggagtgtgtgtggtgtggtgtatgtgtggtggagtgtggggtttgtgtcaggtgtggagtgtgtgtggtgtggggtatgtgtggtgtgaagtgtgtgtggggtggagtgtgtatggtgtggggtatgtgagctgtggagtgtgtgcgTGGTATGGAgagtgtggggtttgtgtggtgtgggaattgtgtgtggtatgtgtggggtggagtgtgtgtggtgtggggtatgtgtggtgtggagtgtgtgtggtttaaagtgtgtgtggtgtggggtttgtgtggtgtgtggggtgtgtgtagtgttgtattGGTTCTGGTGTGGGTTGTGTTCAGCAGTCTCTTCTCCATACAGATACAGTACTGAGGAGCAGGGCAGAGAGGGGGGCCGTGCGCAGGATCGgctggtgtgtgtgagatggcCAACATTCcgcccattcattcctatggggaaAGTTCGTACGATAATTTTACGAAAACCGTAAATCGTATCGGTGAGATCAGCATATCGTCTGAAACGTCTCTGCAAGTTCTGTATGTCTTGTGAATTTCGTGGTTCTAGCTCGAAAATTGT
>TU76405
tgtgtgtgtgtgtgtgtgtgtgtagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtgtggtgtgtgtagtgttgtattGGTTCTGGTGTGGGTTGTGTTCAGCAGTCTCTTCTCCATACAGATACAGTACTGAGGAGCAGGGCAGAGAGGGGGGCCGTGCGCAGGATCGgctggtgtgtgtgagatggcCAACATTCcgcccattcattcctatggggaaAGTTCGTACGATAATTTTACGAAAACCGTAAATCGTATCGGTGAGATCAGCATATCGTCTGAAACGTCTCTGCAAGTTCTGTATGTCTTGTGAATTTCGTGGTTCTAGCTCGAAAATTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU76401 False 342 lncRNA 0.49 2 35420830 35421371
TU76403 False 507 TUCP 0.51 2 35420830 35422149
TU76404 True 852 lncRNA 0.50 3 35420830 35424473
TU76405 False 348 lncRNA 0.48 2 35420830 35458874

Neighbor

gene id symbol gene type direction distance location
LOC111192675 LOC107754426,LOC107670998,LOC107699638,LOC107560048,LOC107753005,LOC105014160 coding downstream 25586 35390808 ~ 35395244 (-)
LOC111192733 NA coding downstream 49870 35367649 ~ 35370960 (-)
LOC103031304 zdhhc12 coding downstream 100042 35316282 ~ 35320788 (-)
LOC103031932 seta,LOC103031932,LOC107752982,LOC107699670,LOC108265615,LOC107754404,LOC107671021 coding downstream 105257 35310689 ~ 35315573 (-)
rpl6 rpl6,LOC107699672,LOC107671003,LOC107559598 coding downstream 136540 35279823 ~ 35284290 (-)
pola2 pola2,LOC107710902 coding upstream 497229 35956103 ~ 35964161 (-)
LOC103036273 pip5k1bb,LOC108412809,LOC108265367,LOC105901155,LOC107664977,LOC106585038 coding upstream 558019 36016893 ~ 36070995 (-)
c6h9orf116 LOC103023176 coding upstream 749342 36208216 ~ 36209659 (-)
anapc7 anapc7 coding upstream 873594 36332468 ~ 36340503 (-)
LOC103035014 rapgef1,rapgef1a,LOC108265900,LOC107557186,LOC107598978 coding upstream 885728 36344602 ~ 36385497 (-)
G56620 NA non-coding downstream 53529 35350825 ~ 35367301 (-)
G56602 NA non-coding downstream 141940 35275947 ~ 35278890 (-)
G56600 polb non-coding downstream 148540 35265893 ~ 35272290 (-)
G56580 NA non-coding downstream 243851 35176438 ~ 35176979 (-)
G56569 NA non-coding downstream 337557 35081003 ~ 35083273 (-)
G56656 NA non-coding upstream 84837 35543711 ~ 35543995 (-)
G56678 NA non-coding upstream 93962 35552836 ~ 35553987 (-)
G56681 NA non-coding upstream 121107 35579981 ~ 35580235 (-)
G56693 NA non-coding upstream 183931 35642805 ~ 35643064 (-)
G56871 NA non-coding upstream 198319 35657193 ~ 35665243 (-)
LOC103038782 slc25a25a,LOC108430373,LOC107754405,LOC107671014,LOC107699669,LOC107560063,LOC107559565,LOC107752985 other downstream 88396 35321985 ~ 35332434 (-)
c6h22orf39 NA other downstream 121080 35296341 ~ 35299750 (-)
acaa2 acaa2,LOC107671002 other downstream 127409 35285422 ~ 35293421 (-)
LOC103038119 LOC108412501,LOC107754395,LOC107671045 other downstream 312410 35090730 ~ 35108420 (-)
LOC103023237 NA other downstream 2243180 33149074 ~ 33177650 (-)
G56887 pxn,pxnb,LOC107748058 other upstream 307896 35766770 ~ 35767677 (-)
bicdl1 bicdl1,nfkb1,LOC107553048,LOC107724381 other upstream 372338 35831212 ~ 35867084 (-)
mrps36 mrps36 other upstream 469606 35928480 ~ 35947822 (-)
LOC103036583 zgc:103670,LOC108412807,LOC107725322,LOC107598984,LOC107698990,LOC107720814,LOC107557201,LOC108265363 other upstream 512856 35971730 ~ 35992502 (-)
unc45b unc45b other upstream 534651 35993525 ~ 36007987 (-)

Expression


Co-expression Network