G56852


Basic Information

Item Value
gene id G56852
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 36749089 ~ 36751641 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU76697
TTTCTGAAGCTTGAAATGCTTTTTATTGTTCGAAACTTGAATGAAAGTGAATGGTTCATGAATGACACACCAGTAATTACATATTGCAAAAACCTATGTTAACACTTATCTAACATACATGGTGTATACTGGTACAAACAGAGGAGCTATACGTTCCTTATGCACAGATTAAAGCATGATAACATTACAACACTGATTGAGGAAACACTACAATGGTTATCTCAGGGCTTCCTGtttctggagctgctggagcttctGGAATCCCAGTTCTCTCCCAGTTTAAAGCAGGGAATTCAATCTGCTAATCTGAATAATCCAGGAAAAGCACAACACAGCTCTGAGACACTGGGATTCTTACTGGGATTTCTGCTGAAGATACTGGTTGAGCTTCACAGCCTCAGGTGTGTCGTTTGAGCAGCTCCCGACATAAACTTTAAGATGAAAAACCaaaagataaagagaaacaGCAGCTGAACTATTAACCGTTACTTAAACACGGCGATCTACGAGGTTAAATTCGTAAGAGTTAAGAGTTAATACTCAACTATTGTACTGGAATTTGTATGAATTTGCTTGCATAAACATTTGCAGCCGGggaaatatttcaataaaacatGTTATATATATCCACAATATATCCACATATTAAGCGCTTtgtataaaagcttttttttttcttcttcttctaatcAATTATAAAATATACGACAAATTAATTAACCAATAATAGCTTGCATAGCTGAGAAAACGTGTTAATAATAGTGCAATACGATAAAGGGGGCTAAACGCTTCTCCAATTATATAcatgtaaataataaagtatattttcatttgttttaacactgtaaaaactaATAATGTCCAATAAACTCATCGTACTAATATGATACACAGAGAAATCAACTTCGAACTTTATAAACGAATATTAAATTTTCCAGTCGACTGAAACTCAAATCCACCCTCCCTTTAGGACTCTGATACGCAGCCGTGGCCGAAAACAAACTATGAGGAACATCTTCTTTGGAAACGACACGACATTACAGAACATATTTCTAAAACCCATGTACATGTCACAGAGAAAACTACAAGTGCTTTGACTACAAATGCTAGGCTAGCTGTGCTAAGGCTCACTCACTGTACCGAgctgagtgatgaactcttgagaggggtatccacaCGTACATGTAACAGAGTACACTGCAAGTGCTTTGACTACAAATGCTAGGCTAGCTGGGCTAAAGCTCACTGTATTAAgctgagtgatgaactcttgagaggggtatccacaTGTACATGTGACAGAATACACTGCAAGTGCTTTGACTACAAATGCTAGGCTAGCTGTGCTAAGGCTCACTCACTGTACCGAgctgagtgatgaactcttgagaggggtatccacaCGTACATGTGACAGAGTACACTGCAAGTGCTATGACTACAAATGCTAGGCTAGCTGGGCTAAAGCTCACTGTATTAAgctgagtgatgaactcttgagaggggtatccacaCGTACATGTGACAGAGTACACTGCAAGTGCTTTGACTACAAATGCTAGGCTAGCTGTGCTAAGGCTCACTCTTGAgaactcttgagaggggtatccacaTGTACATGTGACAAAATACACTACAAATGACTTCAAATGAGTTTGACTACGAATGTTTTCTATTGTGAATGGATATGTACAATAACTACAGTAGAACTGTGGCAGGGAATTGCTCTTTGGTCCAATGAGTAaggctgggtgatatggcacaaataAAGCCATAAGTAAGAAATAAGTAAGATATATGCAATATCATGTTcataaacacattaatattttaaaagattatttttaACATGATTCCTTTGGCTGTTTGATTTATAGTGCTGTATTTTGCTGGTGATTAAACGATAGATGTTCACTTGTTCATGTGGTTAGtgatgtttgttagctctgctacttTGCTGCACTATACTTTTGGCACTATACTATATGCCAGCCATATTTTCCAGCTGTATTctgcatataatataatatgtaatctATATCCCGTAGCCTTTTAGAACCAAAAACAGACCAATATCCTCCCGCCTgttctactgtactgtactggaaGTGTTGCACGACTGGATTTACAATAGTATCTGAATTGCTTTGGTTACGTAATTCTCTACAATTAGAAAAACTATgactcaaaaaaagaaaaaagaccaaATGAGCAAAGTGCCAACTAAAACcgtttaaaactactttaaaaacacACCCAGAGCTTCTATTCTGTTAATCTAGAGTgcgcaaataaaataatacggCATGTACTCACGTACCGTTAAATCTGCAAAACTAGATCTTTACAACACTCAAATCAATAAATCTATATTTATAGTGTTgttgatatttttttca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU76697 True 2399 lncRNA 0.37 3 36749089 36751641

Neighbor

gene id symbol gene type direction distance location
endog endog,LOC107736532 coding upstream 150193 36596016 ~ 36598896 (+)
ntng2 ntng2,ntng2a,LOC108438355,LOC106585788 coding upstream 163677 36493502 ~ 36585412 (+)
LOC103035335 atp2a2,atp2a2a,LOC107757297,LOC108265716 coding upstream 417520 36296278 ~ 36331569 (+)
ift81 ift81,LOC106585468 coding upstream 459288 36262411 ~ 36289801 (+)
LOC103035951 LOC108438364,LOC107598973,LOC107757293 coding upstream 543986 36099455 ~ 36205103 (+)
LOC103040549 NA coding downstream 312758 37064399 ~ 37085499 (+)
LOC111192679 NA coding downstream 334801 37086442 ~ 37091387 (+)
LOC103044321 plekha2,LOC108414546 coding downstream 343073 37094714 ~ 37110794 (+)
LOC103040231 asb13,asb13b,LOC108266053,LOC107734516,LOC107725307,LOC107599049,LOC107664994 coding downstream 359900 37111541 ~ 37115408 (+)
nras nras,LOC107598969,LOC107725308 coding downstream 365778 37117419 ~ 37126020 (+)
G56837 NA non-coding upstream 114262 36561380 ~ 36634827 (+)
G56824 NA non-coding upstream 156113 36591893 ~ 36592976 (+)
G56836 NA non-coding upstream 169551 36560765 ~ 36579538 (+)
G56812 NA non-coding upstream 336332 36412425 ~ 36412757 (+)
G56811 NA non-coding upstream 336874 36411930 ~ 36412215 (+)
G56853 NA non-coding downstream 19175 36770816 ~ 36772871 (+)
G56859 NA non-coding downstream 56062 36807703 ~ 36875347 (+)
G56863 NA non-coding downstream 74126 36825767 ~ 36833046 (+)
G56862 NA non-coding downstream 75889 36827530 ~ 36829490 (+)
G57088 NA non-coding downstream 479349 37230990 ~ 37233036 (+)
G56701 pola2,LOC107710902,LOC107657899 other upstream 784579 35956104 ~ 35964510 (+)
G56504 NA other upstream 1290212 35420718 ~ 35458877 (+)
LOC103032256 dynll1,LOC103397138,LOC107554284,LOC107559583,LOC100698873 other upstream 1464818 35276079 ~ 35284271 (+)
ikbkb ikbkb,vdac3,LOC107560056,LOC107671013,LOC107754399 other upstream 1476561 35226485 ~ 35272528 (+)
LOC103047498 NA other upstream 1759804 34961800 ~ 34989285 (+)
G57066 NA other downstream 253632 37005273 ~ 37005798 (+)
agtpbp1 agtpbp1 other downstream 2357603 39109244 ~ 39153476 (+)
frmd3 frmd3,LOC107678471 other downstream 2540430 39292071 ~ 39370585 (+)
LOC103039219 iqsec2,LOC107747221,LOC107683900,LOC107702804,LOC108265842 other downstream 3215449 39967090 ~ 40090271 (+)
G57664 NA other downstream 3293012 40044653 ~ 40046467 (+)

Expression


Co-expression Network