G56853


Basic Information

Item Value
gene id G56853
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 36770816 ~ 36772871 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU76698
GGGGGTTGGGAGGAACTCGTGTCCGTAACCGAAAGATGCATTTCCGCTTTTTGATTTCTTTTCCCACCCGTTCAGCGCGTCCCCTTTCTTACAGCCCCGGCGGCCCTCGGGTTTGGGGGTCTTCTCTGGAAACAGTTTGGAGGGGGGGTTGGGAGGAACTCGTGTCCGTAACCGAAAGATGCATTTCCGCTTTTTGATTTCTTTTCCACAAAGAaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU76698 True 217 lncRNA 0.53 2 36770816 36772871

Neighbor

gene id symbol gene type direction distance location
endog endog,LOC107736532 coding upstream 171920 36596016 ~ 36598896 (+)
ntng2 ntng2,ntng2a,LOC108438355,LOC106585788 coding upstream 185404 36493502 ~ 36585412 (+)
LOC103035335 atp2a2,atp2a2a,LOC107757297,LOC108265716 coding upstream 439247 36296278 ~ 36331569 (+)
ift81 ift81,LOC106585468 coding upstream 481015 36262411 ~ 36289801 (+)
LOC103035951 LOC108438364,LOC107598973,LOC107757293 coding upstream 565713 36099455 ~ 36205103 (+)
LOC103040549 NA coding downstream 291528 37064399 ~ 37085499 (+)
LOC111192679 NA coding downstream 313571 37086442 ~ 37091387 (+)
LOC103044321 plekha2,LOC108414546 coding downstream 321843 37094714 ~ 37110794 (+)
LOC103040231 asb13,asb13b,LOC108266053,LOC107734516,LOC107725307,LOC107599049,LOC107664994 coding downstream 338670 37111541 ~ 37115408 (+)
nras nras,LOC107598969,LOC107725308 coding downstream 344548 37117419 ~ 37126020 (+)
G56852 NA non-coding upstream 19175 36749089 ~ 36751641 (+)
G56837 NA non-coding upstream 135989 36561380 ~ 36634827 (+)
G56824 NA non-coding upstream 177840 36591893 ~ 36592976 (+)
G56836 NA non-coding upstream 191278 36560765 ~ 36579538 (+)
G56812 NA non-coding upstream 358059 36412425 ~ 36412757 (+)
G56859 NA non-coding downstream 34832 36807703 ~ 36875347 (+)
G56863 NA non-coding downstream 52896 36825767 ~ 36833046 (+)
G56862 NA non-coding downstream 54659 36827530 ~ 36829490 (+)
G57088 NA non-coding downstream 458119 37230990 ~ 37233036 (+)
G57209 NA non-coding downstream 615218 37388089 ~ 37391366 (+)
G56701 pola2,LOC107710902,LOC107657899 other upstream 806306 35956104 ~ 35964510 (+)
G56504 NA other upstream 1311939 35420718 ~ 35458877 (+)
LOC103032256 dynll1,LOC103397138,LOC107554284,LOC107559583,LOC100698873 other upstream 1486545 35276079 ~ 35284271 (+)
ikbkb ikbkb,vdac3,LOC107560056,LOC107671013,LOC107754399 other upstream 1498288 35226485 ~ 35272528 (+)
LOC103047498 NA other upstream 1781531 34961800 ~ 34989285 (+)
G57066 NA other downstream 232402 37005273 ~ 37005798 (+)
agtpbp1 agtpbp1 other downstream 2336373 39109244 ~ 39153476 (+)
frmd3 frmd3,LOC107678471 other downstream 2519200 39292071 ~ 39370585 (+)
LOC103039219 iqsec2,LOC107747221,LOC107683900,LOC107702804,LOC108265842 other downstream 3194219 39967090 ~ 40090271 (+)
G57664 NA other downstream 3271782 40044653 ~ 40046467 (+)

Expression


Co-expression Network