G56883


Basic Information

Item Value
gene id G56883
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35769023 ~ 35772140 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU76741
gatatatttatataatggtATGAACTCAGTCAGTTACCACAACTCACAGAAcgacaaaaaaaagtgtgacagTGTTATGGAAAACAAACGAACGGAAAATTTAACATAGCAAATGTTCACATTgggtaaataaaaacagattattaTATGAAGGCCCACTAAAATAGACTGGAACAgtataaattaaacaaacagagaggagagaaataCTGAAGCCCTCATCacgaaagaaaaaacaaaaaggggagataaaaataaaaaccagtGTTAAAAACCATAAATGGGTTCTGAGGCAGATGTGAAGTCGTTTAGCCAGCAAATCCACCCCATCAGGACCATCGAGTGAGTCCTCCTTTTGGCATGAAGAGGTCTGAGCGAGAAGAACAGCGAGAAAGAGGACAGATCTCTGAATTATCACAGCATCTCTATTAAAAGTGGcatcattatatattttattaattagagaaaacagaaattaGGCTGAAAATCAGAGTAGAGTCCTCATATCAGTCATGAAGAgatcttttttattatcaaaCATCATTgagaatcaacaacaataatCTCAATGGttatgagaagaaaaaaataaaataaaataaaagataaagagCTGTCGGTAACGTCTCACATGCGATCTTTCATCTGatgcaatatataataataataataataataataataataataataatactccatACAGGGTCACTGAAATTCTGGACAAGCAACCAGCTCTTACACACcagcattatttattataaggaGGGACTTTAGAGTGGGGCTACGTTTCAAAAACCATTGGCACCATTATAACCCTCACTCTTTATGACTAGTTATCTAAAATACTGGAGTGACATTTAAGACTttcatgcaaaaaaagaaaaacaaaaaaaaggtaggaaaatacattagaataaatcataaaacaacaatacagCAGTTATCAATATTGCCAAAACTTGAGAGAAATCCTCTCAGATTCGTATCTGAAATCATACGCTGTGTCGAAGGGCTAAAAACTGCACATTGTCACAGCTGCTTTAGGACACTGAATGCGTTTACATTAACTTTATAATAATCTGATTACTACAGAATATCAGAGATTGTCGCTAATCTGatcaaattaaagtattttatattgaaCCTGGGTAATAATATGATAATGTACATCAATTAAAAgattaatattactgttttttttttcctcgcaCTATAAGTTGCATTATGTGAcagtagtaaggaacaggggtgtcaccatgttttccttctaattcagcagatctcgccgctgggtggtgaaACCTGTAAaggtaagctaagctaacaaaactgtaattcttaaaacaaaaaaatatttatttaaagtcaaacaagcgctggatgttaatctacacagatttctctcctgaaaactgtttatttgtgtgagtaaagcacttctgtttatttacagtaagcttagatttccagatttataCTAAGGTTAGctgcggttagctgctaatgctgtcgacagcactacactgaggaaccctgagtgttctggtaagctaTGGCAATATTAGCAAGCGGTTTGTCtaatgtagcttattttaacatggtaaacacgcagactacagtctgatatactcacctctgaacggtgaaagtggctaattagtggctaatgctaatgctgctccagcagtgctggagaaacttcaggCCACAGGCTGATATgcttacctctgaacagggaaatagtggttaaaggctaatgctaatgctgctccagtcttggtgctggagaaacttcactgtaactcctgtataactctgtacttcagtggagtgtctttactgctccttaatacctgactggtagaattcatacataaggagcaccggattataaaatgcactgacaattttggggaaaattaaaggatttaatagtgcaaaaaatgcagtgtttaatTTAGGTCCCCAAGTTTTTCACTAATTTGTGTATACTGAGAATACTTTGGTTACAAGTTTTTCCAGAGTTTTCTTAGAAACCCAGGTCTCTTTACTTAAGATTGGGGAAAGATTTGACAAAATATAAGTAAGAGTAATCAGAGTAAGCTCTGTACATGTCTGCTGTAATAATCAGATATAAACTGAAGATATCAGATTATAAATaagcatgtaaacacactcagtgTCTCATCTACAGTTCACTCGAGgaggacttaaaaaaaaagaaaagaaagaaaagaaaaatacgTTAGGGTGGACGTAAGGCTTATTACCACACTTCCTGTCTCTCCTGTCCACCTCATGTAGGCcaacatgatttatttttatttttattttaaaacaggcTGGTATTTGTTGGCAAACATACACAAAGATATCATTCTCCATAGAAATGTACATAATCTGTTACTAAAGAATAATTTTTTGGTATATTTCTCATATTTCCATTAATTTCTGATAGAAAACAAGGCACTGAGCACTGTAATATAAACTGATTAGATTTCTCGTCGCAACGAATCGACTCGCCGCCCAACCGTTGCAAACAGTGATCACATTTTGCCACCGTGGCACGATCCTCactacatcatcatcatcatcatcatcgtctcACCCGCTCCACAGAGCAGTGTTTCATAGTTAAAAGACTTTCTCAGATCAGCTGATCCAAAATTAACCGAGCTGATCCAAACAGAACTGATCTGAAGCCACATTCTTAAAACGGTTTCTTTCAGACTCAACCAGTGAGCAGAACATCTATCCTAACAGCTTCtaacctctttctttcttcctcctcaCCTTTCTTCCTCCTACACAAGCTTtcaccacactctcacacact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU76741 True 2839 lncRNA 0.36 2 35769023 35772140

Neighbor

gene id symbol gene type direction distance location
LOC111192675 LOC107754426,LOC107670998,LOC107699638,LOC107560048,LOC107753005,LOC105014160 coding downstream 373779 35390808 ~ 35395244 (-)
LOC111192733 NA coding downstream 398063 35367649 ~ 35370960 (-)
LOC103031304 zdhhc12 coding downstream 448235 35316282 ~ 35320788 (-)
LOC103031932 seta,LOC103031932,LOC107752982,LOC107699670,LOC108265615,LOC107754404,LOC107671021 coding downstream 453450 35310689 ~ 35315573 (-)
rpl6 rpl6,LOC107699672,LOC107671003,LOC107559598 coding downstream 484733 35279823 ~ 35284290 (-)
pola2 pola2,LOC107710902 coding upstream 183963 35956103 ~ 35964161 (-)
LOC103036273 pip5k1bb,LOC108412809,LOC108265367,LOC105901155,LOC107664977,LOC106585038 coding upstream 244753 36016893 ~ 36070995 (-)
c6h9orf116 LOC103023176 coding upstream 436076 36208216 ~ 36209659 (-)
anapc7 anapc7 coding upstream 560328 36332468 ~ 36340503 (-)
LOC103035014 rapgef1,rapgef1a,LOC108265900,LOC107557186,LOC107598978 coding upstream 572462 36344602 ~ 36385497 (-)
G56878 ctu1 non-coding downstream 34779 35728692 ~ 35734244 (-)
G56872 NA non-coding downstream 100680 35658428 ~ 35668343 (-)
G56871 NA non-coding downstream 103780 35657193 ~ 35665243 (-)
G56693 NA non-coding downstream 125959 35642805 ~ 35643064 (-)
G56681 NA non-coding downstream 188788 35579981 ~ 35580235 (-)
G56891 NA non-coding upstream 12640 35784780 ~ 35852433 (-)
G56881 rab35,LOC108430363,LOC107699662,LOC107671023 non-coding upstream 39391 35811531 ~ 35822638 (-)
G56911 NA non-coding upstream 55132 35827272 ~ 35829872 (-)
G56914 NA non-coding upstream 98111 35870251 ~ 35892056 (-)
G56916 LOC103027304 non-coding upstream 99696 35871836 ~ 35874028 (-)
G56887 pxn,pxnb,LOC107748058 other downstream 1346 35766770 ~ 35767677 (-)
G56638 NA other downstream 310149 35420830 ~ 35458874 (-)
LOC103038782 slc25a25a,LOC108430373,LOC107754405,LOC107671014,LOC107699669,LOC107560063,LOC107559565,LOC107752985 other downstream 436589 35321985 ~ 35332434 (-)
c6h22orf39 NA other downstream 469273 35296341 ~ 35299750 (-)
acaa2 acaa2,LOC107671002 other downstream 475602 35285422 ~ 35293421 (-)
bicdl1 bicdl1,nfkb1,LOC107553048,LOC107724381 other upstream 59072 35831212 ~ 35867084 (-)
mrps36 mrps36 other upstream 156340 35928480 ~ 35947822 (-)
LOC103036583 zgc:103670,LOC108412807,LOC107725322,LOC107598984,LOC107698990,LOC107720814,LOC107557201,LOC108265363 other upstream 199590 35971730 ~ 35992502 (-)
unc45b unc45b other upstream 221385 35993525 ~ 36007987 (-)
LOC103023491 fnbp1,LOC107599022,LOC108264955 other upstream 453989 36226129 ~ 36261545 (-)

Expression


Co-expression Network