G56887 (pxn,pxnb,LOC107748058)


Basic Information

Item Value
gene id G56887
gene name pxn,pxnb,LOC107748058
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35766770 ~ 35767677 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU76749
ATTTATATAGGTGTGACAAGCATATTGTTTTCTAAcgtattttataatattattgatTTTCCTCAGTTCACACATACTCTGCAAACAAAGCACTCAGGATGCCAGAGGCTGTTCAGGGCAGAGATGTAATTCTCCAGGATGGCTCGGGCGCAGCCTCCACACTTAGGAGCAAACAGGTCAAAATAATCCTTACGACAGTACGCCTTCCCGTCTTTCTCATGGAAACCCTCAGGGCCGAAGAACGCACCGCACTGAGCACAGAAGAAATGTTCAGGATGCCATGTCCTGTCCAGAGCAGTCACTACTTTATCCAGAATGGGGCCGTTGCAGTAGTAGCACCGAGGAGAGAAGAGGTGGTGATAGTCCCTCTCACAGTACGGCTGTCCGTCACGTTCAAAGAAGTTTCTAGAACCGATCTCCTCCTGGCAGTGCGTGCACACAAAGTGCTCCGGGTGCCATGTGCGGCCCATGGCTGTTACCACCTg

Function

symbol description
pxnb Predicted to enable metal ion binding activity. Acts upstream of or within myotome development. Predicted to be located in cell cortex; cell junction; and cytoskeleton. Is expressed in myotome; pectoral fin bud; and vertical myoseptum. Orthologous to human PXN (paxillin).
pxn Enables several functions, including beta-catenin binding activity; neuropilin binding activity; and vinculin binding activity. Involved in several processes, including endothelial cell migration; enzyme linked receptor protein signaling pathway; and positive regulation of stress fiber assembly. Located in several cellular components, including focal adhesion; lamellipodium; and stress fiber.

NR:

description
PREDICTED: paxillin isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU76749 True 485 TUCP 0.49 3 35766770 35767677

Neighbor

gene id symbol gene type direction distance location
LOC111192675 LOC107754426,LOC107670998,LOC107699638,LOC107560048,LOC107753005,LOC105014160 coding downstream 371526 35390808 ~ 35395244 (-)
LOC111192733 NA coding downstream 395810 35367649 ~ 35370960 (-)
LOC103031304 zdhhc12 coding downstream 445982 35316282 ~ 35320788 (-)
LOC103031932 seta,LOC103031932,LOC107752982,LOC107699670,LOC108265615,LOC107754404,LOC107671021 coding downstream 451197 35310689 ~ 35315573 (-)
rpl6 rpl6,LOC107699672,LOC107671003,LOC107559598 coding downstream 482480 35279823 ~ 35284290 (-)
pola2 pola2,LOC107710902 coding upstream 188426 35956103 ~ 35964161 (-)
LOC103036273 pip5k1bb,LOC108412809,LOC108265367,LOC105901155,LOC107664977,LOC106585038 coding upstream 249216 36016893 ~ 36070995 (-)
c6h9orf116 LOC103023176 coding upstream 440539 36208216 ~ 36209659 (-)
anapc7 anapc7 coding upstream 564791 36332468 ~ 36340503 (-)
LOC103035014 rapgef1,rapgef1a,LOC108265900,LOC107557186,LOC107598978 coding upstream 576925 36344602 ~ 36385497 (-)
G56878 ctu1 non-coding downstream 32526 35728692 ~ 35734244 (-)
G56872 NA non-coding downstream 98427 35658428 ~ 35668343 (-)
G56871 NA non-coding downstream 101527 35657193 ~ 35665243 (-)
G56693 NA non-coding downstream 123706 35642805 ~ 35643064 (-)
G56681 NA non-coding downstream 186535 35579981 ~ 35580235 (-)
G56883 NA non-coding upstream 1346 35769023 ~ 35772140 (-)
G56891 NA non-coding upstream 17103 35784780 ~ 35852433 (-)
G56881 rab35,LOC108430363,LOC107699662,LOC107671023 non-coding upstream 43854 35811531 ~ 35822638 (-)
G56911 NA non-coding upstream 59595 35827272 ~ 35829872 (-)
G56914 NA non-coding upstream 102574 35870251 ~ 35892056 (-)
G56638 NA other downstream 307896 35420830 ~ 35458874 (-)
LOC103038782 slc25a25a,LOC108430373,LOC107754405,LOC107671014,LOC107699669,LOC107560063,LOC107559565,LOC107752985 other downstream 434336 35321985 ~ 35332434 (-)
c6h22orf39 NA other downstream 467020 35296341 ~ 35299750 (-)
acaa2 acaa2,LOC107671002 other downstream 473349 35285422 ~ 35293421 (-)
LOC103038119 LOC108412501,LOC107754395,LOC107671045 other downstream 658350 35090730 ~ 35108420 (-)
bicdl1 bicdl1,nfkb1,LOC107553048,LOC107724381 other upstream 63535 35831212 ~ 35867084 (-)
mrps36 mrps36 other upstream 160803 35928480 ~ 35947822 (-)
LOC103036583 zgc:103670,LOC108412807,LOC107725322,LOC107598984,LOC107698990,LOC107720814,LOC107557201,LOC108265363 other upstream 204053 35971730 ~ 35992502 (-)
unc45b unc45b other upstream 225848 35993525 ~ 36007987 (-)
LOC103023491 fnbp1,LOC107599022,LOC108264955 other upstream 458452 36226129 ~ 36261545 (-)

Expression


Co-expression Network