bicdl1 (bicdl1,nfkb1,LOC107553048,LOC107724381)


Basic Information

Item Value
gene id bicdl1
gene name bicdl1,nfkb1,LOC107553048,LOC107724381
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 35831212 ~ 35867084 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU76780
TTATTGAGTTGAGGCTGATTCCTCTGTTTTATGTTATTCTGCTGTAGATCGCACTGCTCTCATTAGAAGTGTGTTCGTCTCGGGAGGAGAACGAGAGATTACGAGCCATGTCTGAGGTTCAAGAACCCAACGAACAGCTACAGAGCGCCATCCGAGACCGAGACGACGCCATCGCCAAGAAAAAAGCAGTGGAGTTGGAGCTGGCTAAGTGTAAGATTGACATCATGTCTCTGAACAGTCAGCTCCTGGACGCTATTCAGCAAAAGCTCAACTTGTCGCAACAGCTAGAAGCCTGGCAGTTTGCCTCCTCAGGGCTGTTCACTGTGTGGCTCTTGTGGTTTCTGATTTAgtggcctttctcagcttccgtaCGAACCCCCTCTCCCCCCTGTGGTAGCCCCTTCCTGCCTTAGAGgATGATATGCACAGAGTGATAGATCAGCAGTTGATGGATAAGCAtcaggaggaatggagggatgCTCCGTACTCTTTCTCCGGGGCCGGCGTTGGCCCCCGCGCCCATTCGGGACCCCCTTCCAGGCGGCCCCACCGCCTCTCTGATCGGGACAAGCGCCTCTTCTCGTTTTTTAAGAAGAACTGAGTCGGTCTAGAGAGGAAGAAGCGAAAGACTAAAAAACGTGAAGCACTGAATTATTGTAGAAACGTTTTCATCATTTCCactcaaataaaacatatattatgtaatttatttgagtGGAAATGATGTTTAGATTTGAATCAAGATTTGAACAATTAATTCAGTGCATCAGTCTATTTTAGTGTATacagaataagagaaagagagagagagagaaaaaaaggaaaagcaatGGCAGCAAACCCAGTGATGGACCGAGCCAAAGACTAATACAGTAGAGCAAATAACCACTAAACCCACCACAGAATCTTGTGAAGGCCTGGAGCCGTTTTGCACTTTATCTGCCCCGATCACTCCACTCCTTCAGATCATTCCAGATGAAGTTAATGTGAATTATAGAAAGCTACGTTCAGACTGCCAGCCAATccaattttttccatttttcaaatttatgtAGAATTTTCTGATTTCTTCAGATCTGATTTCTTTAGTACCTGAATTAAGGTGTGCCAATACATTAATACTGCAGTATATGCAAAGCACCGactggtccagcagtctaaagtgctgccactatgatcaaaaaagattgctagttcgaatcctgatcatgcagcttgccatcatctgTCGGAGCCCAGAGGGGTGGGTACAGGAAATGGCACTTGTTCTTTCCCctattcatcactcctagggtgatgtggatcagcacaaggctgcatctgtgagctgatgtatcagaaccgagtctctgcgcttttctccgagcgttagcgctgtgatgctactcggtgtgggagggagggggagttttaattggggagaaaatgggataaaaagtagaaattaataaatcaagATCCACAAACGAATCCGATGtgcctgcagtctgaacgcAGCCTTATCAAGACGTTTAAGAAAGAAGGTCTTTGGCTTTTATCCTCAACTGATGGAGCTTCTAAACTCTGTTTCAGGGTGATTTGTACAGGGTTACCACGTTTATACCCCACGTCCGAGGCCAGCTTCCCCTCCGAGTGCCTCAGACACACCTCCTCACCCCActgccagccaatcagcttctCTGGAAGTCTGAGATTTAGCTCTGACAGCCTGAAGGACCTGTTTGGCCTTTATCTCAGGGCGATCTGGACGACGGAGGGTTAAACTCTGCGATTATAAGTCGGTCTGCAGGTTGTAGTTGTAGTTTTGTGAATTTAGCTTTAAATCACTGCAGCAATTTATACATCCGCTGGAGAACGAGATTCATTCACATGTTCAGGGAGAAAGAGGCCTTATTATCAATACGCTGTTTAATaagtaagtaattaagtaagcTTTATTTATATCTAATGACTacacataaataatacatacaaacaaaacacagctaaaataaatcacttaaataacatAGTAAAATAAGTATcataaaacacagataaaataagtaaagagtgctaaaatacaGGATATATACATGGGATAAATCGACCACTAAATTACCCCAGTAACTCACTGTTTTCCAGCAAACCTACAATTAATGCAGTGAATTTATCCTTCAATACATATGAAGACATAATGTCAGTTTATTAAGTTATATCTTATAAGTTTATATCTTACACTAACACCGCACCTGTGTtataatcaaaaacaaaaataatagt
>TU76790
cCCTCATATGTTTCACACATGTGTGTGTTATTAGGTCTTAGCTCTAGAActccaagtgttttttttatcacattttctaattttgtttaaaaaaaattctgctgAGTTTCTGAAAATTTGGTTGTGAAGACTTATAGCTCCTGTGATGTGTTCTAAGCTTTTGTTTCTAAtagctttattttttcatctgtacattactttttcattttatacttaaaaaaacaaacacttttacttaaagagtaaaaagcttgagttgatacttcttcAACTTTTTTAAACCATGAAGAATTTTCAACCtgagtatctatacttctacctactgAGTAATGAATAcagatacttttcacacctggCTGAGTGTATAGGTGACTGTGCAGGTGTGTATATGTTGTGctgggttttgtgtgtgtgtgtgtttggtaccAGGCTGTGTTGAGGAGCTGATTAAACTTATCAGAGCTGCTGAATTCCTCCTGTGGGGGAGGTGGAGCTCAGGCAGCTCCTTCATGCTGAATCTGAACATTCCTGAATCCGGGGGAGCGCAGTCTCCGCCCGCACGCGCTCCTGGTAAACGGTGTGTGCACGCGCTTCTGGTGAACGGTGGGCGCACGCGCTTCTGGTGAACGGTTGGCACTGACGGTCTCGCGGCTCCGCGGAGATGTGTCTGACCCGCGGCTCCTCGCGCTTTTCCCCCGCAGATAAAGATGCTGTCGGAGCGTAAGCGCGAGCTGGAGCGGCGCGTGACCGCCGTGCTGGAGGAGAACGAGCAGCTGCAGCATACCGTGGACAGCCTGCGGGAGCGCGCGCTGGTGCTCGAGAGACAGTGCCACGAGAAGGACCTGCAGcTGAGGCAGGGTCAGCTGGAGCTTCAGGAGGTGCGGGTGTCTCACCGGCAGCTGAGCGCACAGCTGGAGGAGCTGAGTGAGGAGCAGAGTCTGCAGAGCTTCAGCACCAACAGCCACTCACTGCTGTGTGAGATCGAGCAGAGCATGGagcaggaggagctggagcaggagagggagcagtTGCGGTTGCAGCTGTGGGAAGCTTACTGCCAGGTGCGCTCTATCTGTTCTCACCTGAGAGGAAATGACATCACAGACTCCGCCCTCTCCACGGATTCTTCGATGGACGAATCGTCGGAGACGTCGTCTGCTAAAGACGTTCCTACAGGCAGCCTGCAGTCCAGCCTGCTGGAGCTGCGCAGACTCACACAGAACCTGCTGGACGGAAATGAGTCGacggtaacacaca
>XM_022670574.1
GAGGGGCTCGCGCTCGGACTGAACGCCCGAACGCTGCTGtatctgctgtgtgtgtatatgtgtgtgtgtagcctaCGTGTACGTACATTTATACGTTtgtacgtgtgtgtatgtgagtgtgtgagagagaaggagcGCACGCGAGGCCGGGCATCCGCAGAATAGCTCCGCTCCGGGTGTAGGGGGATTGTAATAGCACCATTATGGGGAGGACGGAGCACCGCGCACCGGCGGAGTGGACCACGGAACGACCGCGGGGGTCGCGCGCAGCATCCTTAAGGTGTCCTTTTTTCCGTCCGTGTGAAGCATAAACAGGAGCGGCTCCGTCGTGCCGGGATTACCGAGGAGATTAACGGGCTGTGTGGTTCGATGACGGGATACCGGTTCAGAGGTACGGAATGTAAACGATCTCCAATCTGAGGATTTACCCCCCAGCACACCCCCAGCATCGCGGTACATCCATGGCGCTGTCCTCGTCCTACGGCGTACCGGGCCGCACCGGGCCACCGAGACCGCGAGGCCAGCGGCTCTGAAGCGGCTCCGCAGTCGTTCGCTTTCCGCATGTCCGCCTTCCGCCTGGACCTGCACCACGCGCCTTCAGCACCACGGCGGCTGGACAGCGACCGCATGGACTCCTCGCCTTCAGCACCACCGGAGCCGGACAGCGACCGCATGGAGTCCCCGCTGGACTCCAGCCCGCAATTCCCGCAGTGCCCGCCGCTCCACGCGCCTCCTCCTCTCTCAGATACCGGAGGGCTCGAGCCTCCTTCGCCGCCGCCTCCGCCGCTGCTGCACCCAGGAGGCCTGGGCACGGCGCTCGAGGAGGAGCTAGCCATGCTGGCGCGCGAGCGGGAaagggagcaggaggaggacGCGGCGGAGCTGGCCGCCGCCTCGGAGGCGCCGCTGGAGCAGGACGTGGACCTCCTCGCGCTCTTCCGACAAAAGGAGAGGGACTTGGTCCTCGCCGCCAAACTCGGCAAAGCACTACTTGAACGCAACCAAGACCTCAGCAAGCAATACGAGAACATGAACCAGGAGCTAAACCAGAAGCTGGAGcACCTGGAGCAGGAGAAGCACGAGCTGCGGCGGCGGTTGGAGAGGCGTGAGGGCGAGTGGGAGGGCCGGGTGGCCGAGCTGGAGACGGATGTGCAGCAGCTTCAGGGTGAACTGGAGAGACACCAGATGCAGCTTCGAGAAGCTGATCGGGATAAAACCCGCGCCATCACCGAGCTGTCGGAGCAGAACCACCGTCTACTGGAGCAGCTCAGCAGAgCTGCTGAAGTGGAGAGACAGCTGTCCACTCAGGTCCACTCTTTACGGGATGATTTCAGAGAGAAGAGCCTCTCCACCAACCAGCACATGACACGTCTCGAGAACCTACAGGCGGAGATAAAGATGCTGTCGGAGCGTAAGCGCGAGCTGGAGCGGCGCGTGACCGCCGTGCTGGAGGAGAACGAGCAGCTGCAGCATACCGTGGACAGCCTGCGGGAGCGCGCGCTGGTGCTCGAGAGACAGTGCCACGAGAAGGACCTGCAGcTGAGGCAGGGTCAGCTGGAGCTTCAGGAGGTGCGGGTGTCTCACCGGCAGCTGAGCGCACAGCTGGAGGAGCTGAGTGAGGAGCAGAGTCTGCAGAGCTTCAGCACCAACAGCCACTCACTGCTGTGTGAGATCGAGCAGAGCATGGagcaggaggagctggagcaggagagggagcagtTGCGGTTGCAGCTGTGGGAAGCTTACTGCCAGGTGCGCTCTATCTGTTCTCACCTGAGAGGAAATGACATCACAGACTCCGCCCTCTCCACGGATTCTTCGATGGACGAATCGTCGGAGACGTCGTCTGCTAAAGACGTTCCTACAGGCAGCCTGCAGTCCAGCCTGCTGGAGCTGCGCAGACTCACACAGAACCTGCTGGACGGAAATGAGTCGacgATCGCACTGCTCTCATTAGAAGTGTGTTCGTCTCGGGAGGAGAACGAGAGATTACGAGCCATGTCTGAGGTTCAAGAACCCAACGAACAGCTACAGAGCGCCATCCGAGACCGAGACGACGCCATCGCCAAGAAAAAAGCAGTGGAGTTGGAGCTGGCTAAGTGTAAGATTGACATCATGTCTCTGAACAGTCAGCTCCTGGACGCTATTCAGCAAAAGCTCAACTTGTCGCAACAGCTAGAAGCCTGGCAGgATGATATGCACAGAGTGATAGATCAGCAGTTGATGGATAAGCAtcaggaggaatggagggatgCTCCGTACTCTTTCTCCGGGGCCGGCGTTGGCCCCCGCGCCCATTCGGGACCCCCTTCCAGGCGGCCCCACCGCCTCTCTGATCGGGACAAGCGCCTCTTCTCGTTTTTTAAGAAGAACTGAGTCGGTCTAGAGAGGAAGAAGCGAAAGACTAAAAAACGTGAAGCACTGAATTATTGTAGAAACGTTTTCATCATTTCCactcaaataaaacatatattatgtaatttatttgagtGGAAATGATGTTTAGATTTGAATCAAGATTTGAACAATTAATTCAGTGCATCAGTCTATTTTAGTGTATacagaataagagaaagagagaaagagagagaga

Function

symbol description
bicdl1 Predicted to enable dynactin binding activity and small GTPase binding activity. Involved in eye development. Acts upstream of or within several processes, including embryonic camera-type eye development; negative regulation of neuron projection development; and vesicle transport along microtubule. Predicted to be located in centrosome. Is expressed in brain; pronephros; and retina. Orthologous to human BICDL1 (BICD family like cargo adaptor 1).
nfkb1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in several diseases, including carcinoma (multiple); common variable immunodeficiency; melanoma; prostate cancer; and tropical spastic paraparesis. Orthologous to several human genes including BICDL1 (BICD family like cargo adaptor 1).

NR:

description
PREDICTED: bicaudal D-related protein 1

GO: NA

KEGG:

id description
K16756 BICDL, CCDC64; BICD family-like cargo adapter

RNA

RNA id representative length rna type GC content exon number start site end site
TU76780 False 2262 lncRNA 0.43 5 35831212 35837208
TU76790 False 1257 TUCP 0.51 4 35839447 35844514
XM_022670574.1 True 2593 mRNA 0.58 9 35832686 35867084

Neighbor

gene id symbol gene type direction distance location
LOC111192675 LOC107754426,LOC107670998,LOC107699638,LOC107560048,LOC107753005,LOC105014160 coding downstream 435968 35390808 ~ 35395244 (-)
LOC111192733 NA coding downstream 460252 35367649 ~ 35370960 (-)
LOC103031304 zdhhc12 coding downstream 510424 35316282 ~ 35320788 (-)
LOC103031932 seta,LOC103031932,LOC107752982,LOC107699670,LOC108265615,LOC107754404,LOC107671021 coding downstream 515639 35310689 ~ 35315573 (-)
rpl6 rpl6,LOC107699672,LOC107671003,LOC107559598 coding downstream 546922 35279823 ~ 35284290 (-)
pola2 pola2,LOC107710902 coding upstream 89019 35956103 ~ 35964161 (-)
LOC103036273 pip5k1bb,LOC108412809,LOC108265367,LOC105901155,LOC107664977,LOC106585038 coding upstream 149809 36016893 ~ 36070995 (-)
c6h9orf116 LOC103023176 coding upstream 341132 36208216 ~ 36209659 (-)
anapc7 anapc7 coding upstream 465384 36332468 ~ 36340503 (-)
LOC103035014 rapgef1,rapgef1a,LOC108265900,LOC107557186,LOC107598978 coding upstream 477518 36344602 ~ 36385497 (-)
G56911 NA non-coding downstream 1340 35827272 ~ 35829872 (-)
G56881 rab35,LOC108430363,LOC107699662,LOC107671023 non-coding downstream 8574 35811531 ~ 35822638 (-)
G56883 NA non-coding downstream 59072 35769023 ~ 35772140 (-)
G56878 ctu1 non-coding downstream 96968 35728692 ~ 35734244 (-)
G56872 NA non-coding downstream 162869 35658428 ~ 35668343 (-)
G56914 NA non-coding upstream 3167 35870251 ~ 35892056 (-)
G56916 LOC103027304 non-coding upstream 4752 35871836 ~ 35874028 (-)
G56939 NA non-coding upstream 146323 36013407 ~ 36014123 (-)
G56940 NA non-coding upstream 183294 36050378 ~ 36068161 (-)
G56946 NA non-coding upstream 212703 36079787 ~ 36097997 (-)
G56887 pxn,pxnb,LOC107748058 other downstream 63535 35766770 ~ 35767677 (-)
G56638 NA other downstream 372338 35420830 ~ 35458874 (-)
LOC103038782 slc25a25a,LOC108430373,LOC107754405,LOC107671014,LOC107699669,LOC107560063,LOC107559565,LOC107752985 other downstream 498778 35321985 ~ 35332434 (-)
c6h22orf39 NA other downstream 531462 35296341 ~ 35299750 (-)
acaa2 acaa2,LOC107671002 other downstream 537791 35285422 ~ 35293421 (-)
mrps36 mrps36 other upstream 61396 35928480 ~ 35947822 (-)
LOC103036583 zgc:103670,LOC108412807,LOC107725322,LOC107598984,LOC107698990,LOC107720814,LOC107557201,LOC108265363 other upstream 104646 35971730 ~ 35992502 (-)
unc45b unc45b other upstream 126441 35993525 ~ 36007987 (-)
LOC103023491 fnbp1,LOC107599022,LOC108264955 other upstream 359045 36226129 ~ 36261545 (-)
G56987 atp2a2,atp2a2a,LOC108265716,LOC107580452 other upstream 451972 36319056 ~ 36320695 (-)

Expression


Co-expression Network