G57010


Basic Information

Item Value
gene id G57010
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 36411235 ~ 36412749 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU76924
gcagtgtgccaagtcctgctggagaatgaaatccacatctccataaaagtggtgtctctactcttcctccagactcaaTTATTGTTCAATTATTCTATagtcttttattttacaaatgaaaaattgtaattgtaaaatttgctgatgatcagtgatggtttggagagtcatgtctgtcatctgctggtgttgatccactgtgttttattatcaagtctaaagtcagtgcagttttgttttcccacaaaatcttacagcacttcatatcttacagcttccctctgctgatctGAAcctttatagagatgcagatttcattttccagcaggatttggcacactgcccacactgccaaaagtaccaattggtcttatttaaattctaattttctgagacactgatttttgggttttcattgtctgtgagcttcataatcatcaacaataaaatcaataaacaagtaaaatagatcacactgtgtttaatacatctatataatatatgagttttacttttttttgccgATACCATTAGAAAATGTATCACGATTCAattaaatatctttatattgcccagctctagctGATGCATCCTATTCTGGTGCAACATGTGAACAACAGTGCAGCATTTTTACCTGATGTGCAGGCATCGTGTACCTGTTCTAGAATCTGAATGATTATCTCAGTAGCTTTTGGTTTACTGGCTGTTTTTGATTCTTTAAGAAGGTTTTGGactttatatcatttatatcagtaaaCCTGAACTCACCTGAACTCCAGACTTACGTTTTTCACTCTGCTCACTTCTACAGTTCtccacacaaactcacacaaacTCGTGTCctacttttttactcttttttttttttttactcttagtTTCGCAGCTTTTCTACCTAAAAGACGCTCAGTCATGCagcacactttgtttttttgtgtgtttttttttgttgttgtttttttgttgtttttttgttgttgtttgtgagCAGTGTTTTAGTTCCATTTAGAAAGAAAAGTCGCTCAATATTTCATGATCCTCCCTTGAaatgtttgtgttattttataataaaatgaagcGCCACTGAATGAACTGGGTCATAACCTGCTTGTGTTCTTCTgtcactgctctctctctctctttctctctctctctctctctttctctctctcttctctctctctctttctctctctctctctctctctctctctcttctctctctctctatatgattgattaaatttttttttgtcttgtttcttTTGATACAATAAACTTCAACAAGTGTGTTTTTCAATCtttccttgttttttctttgtgttttgtcttttttaatatGCTAATACACTGCGTTCCAAAATATTATTATGCAAATGATATATTTCCCTGATTTTCCTAAATGGTCGATGCAAATGACAGTCATTATAATAAAAggcattttaatattttcatactGTTTTTAAAGGCATTGCACTTGTTGTATCTACTATTTGACGCTTTTCAGCAGCAGag
>TU76925
gcagtgtgccaagtcctgctggagaatgaaatccacatctccataaaagtggtgtctctactcttcctccagactcaaTTATTGTTCAATTATTCTATagtcttttattttacaaatgaaaaattgtaattgtaaaatttgctgatgatcagtgatggtttggagagtcatgtctgtcatctgctggtgttgatccactgtgttttattatcaagtctaaagtcagtgcagttttgttttcccacaaaatcttacagcacttcatatcttacagcttccctctgctgatctGAAcctttatagagatgcagatttcattttccagcaggatttggcacactgcccacactgccaaaagtaccaattggtcttatttaaattctaattttctgagacactgatttttgggttttcattgtctgtgagcttcataatcatcaacaataaaatcaataaacaagtaaaatagatcacactgtgtttaatacatctatataatatatgagttttacttttttttgccgATACCATTAGAAAATGTATCACGATTCAattaaatatcttt

Function

GO:

id name namespace
GO:0044237 cellular metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU76924 True 1515 lncRNA 0.34 1 36411235 36412749
TU76925 False 565 lncRNA 0.34 1 36412185 36412749

Neighbor

gene id symbol gene type direction distance location
LOC103035014 rapgef1,rapgef1a,LOC108265900,LOC107557186,LOC107598978 coding downstream 25738 36344602 ~ 36385497 (-)
anapc7 anapc7 coding downstream 70732 36332468 ~ 36340503 (-)
c6h9orf116 LOC103023176 coding downstream 201576 36208216 ~ 36209659 (-)
LOC103036273 pip5k1bb,LOC108412809,LOC108265367,LOC105901155,LOC107664977,LOC106585038 coding downstream 340240 36016893 ~ 36070995 (-)
pola2 pola2,LOC107710902 coding downstream 447074 35956103 ~ 35964161 (-)
med27 med27,LOC107665006,LOC107557205,LOC107725311,LOC107757301 coding upstream 123 36412872 ~ 36492714 (-)
LOC103045855 LOC108438352,LOC108265896 coding upstream 192658 36605407 ~ 36641563 (-)
LOC103045561 phf19,LOC107557185,LOC107599052,LOC106585785 coding upstream 342417 36755166 ~ 36778310 (-)
LOC103045252 LOC108438351 coding upstream 383981 36796730 ~ 36818211 (-)
LOC107197187 NA coding upstream 631052 37043801 ~ 37048616 (-)
G57013 NA non-coding downstream 2783 36408175 ~ 36408452 (-)
G57001 NA non-coding downstream 70199 36298059 ~ 36341036 (-)
G57000 NA non-coding downstream 79667 36314025 ~ 36331568 (-)
G56982 NA non-coding downstream 177889 36231079 ~ 36233346 (-)
G56966 NA non-coding downstream 186225 36221459 ~ 36225010 (-)
G57012 NA non-coding upstream 187289 36600038 ~ 36603428 (-)
G57043 NA non-coding upstream 413018 36825767 ~ 36839252 (-)
G57107 NA non-coding upstream 630578 37043327 ~ 37058088 (-)
G57121 nras,LOC107598969,LOC107725308 non-coding upstream 704695 37117444 ~ 37207042 (-)
G57147 dennd2c,LOC108438557,LOC107665005,LOC107674357,LOC107566809,LOC107734514,LOC107598967 non-coding upstream 762552 37175301 ~ 37181186 (-)
G57014 NA other downstream 7937 36402850 ~ 36403298 (-)
G56987 atp2a2,atp2a2a,LOC108265716,LOC107580452 other downstream 90540 36319056 ~ 36320695 (-)
LOC103023491 fnbp1,LOC107599022,LOC108264955 other downstream 149690 36226129 ~ 36261545 (-)
unc45b unc45b other downstream 403248 35993525 ~ 36007987 (-)
LOC103036583 zgc:103670,LOC108412807,LOC107725322,LOC107598984,LOC107698990,LOC107720814,LOC107557201,LOC108265363 other downstream 418733 35971730 ~ 35992502 (-)
LOC107196826 LOC108438352,LOC106580127,LOC108265896,LOC106585786 other upstream 267417 36680166 ~ 36746634 (-)
LOC111192678 phf19 other upstream 372559 36785308 ~ 36792444 (-)
brpf3 brpf3,LOC108265695 other upstream 868364 37281113 ~ 37299607 (-)
LOC103043112 LOC108438563,LOC108265696,LOC107725303,LOC107653398,LOC107598961,LOC107674288,LOC107734522,LOC107570980,LOC105889772 other upstream 889298 37302047 ~ 37326736 (-)
LOC111192682 NA other upstream 1848368 38261117 ~ 38305466 (-)

Expression


Co-expression Network