G57012


Basic Information

Item Value
gene id G57012
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 36600038 ~ 36603428 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU76927
gttaccatatatatatatggactcataattaaaaaaaaggcaatCCTCACGCGCACAGACGTATTAATAAACCTACACACAGAGCACACGTCACGCGTGAGCGTCAGGGGGCTgaaggtacaggtacaggttgcattcttcacttttatttttaatttttcctccACTAGAACCTGTTCTCAGGGCAGCTGCAGCAAAACACTATATAGCGGCATGCTCCGCCCACATGTGCGCACATCAGAACAAGCGTTGTGACTTTGGACAAGCTTTTAATCATGAACTATATTAGTGCACAACCTACAGACCTactaacatttctcccaaattccaaattaaaaatatcatcatttagagcaATTACTTGCAGGAAATTCAAGATGTAGAGCTTTTGGGcctcaaataaggcaaagaaaacaggttttaaaagttcagaaataatcaatatttggtggaataatcctggtttttaatcacagtttttaattcatgcatcttggcatcatgttctcctcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgtaaaaattcaagcagttcagtttggtggtttgatggtttgtgatcatccatcttcctcttgattataCCTGAGGgggcgctgcagaggtggaaattaacacaataaaagcattttgaaggttagaaaatgtttttaaaaaagcagagAATTTAAGACCGGTTTGTTTCATCACCTCAAAAggacacatttcagctattgataagaaaatatataagattGAGGTTTTAGTGGTTCTTTAAGTCATCCCCTTAATCTATGTTATACAGATAAAAAGCATAGCTGCATAGCTCCTTTCATATAAGAAGAATACCTTgaattaattagtgtaattcgtcctctgcattgttttaaaatggtttatcattcatttgatacattttcttatGTTTTTGAGCAAGGCTTGTCCAACCCAACAACCTTATTTAGTTTCTAACAGagtataaaagtacattttaattgtGGGCGGAGCATGAGAATAACTTTTAGCTGCACAGGTCCGTCAGTCCTGCTGAGGAACGCTCCAGTAATACTTAGAGagcattaataaatataatataataaataataaacatgatCTCCTGTAGTGTGGGTGTTTTGAGCTGAAGTGAACTAAAGTGAAGGTTTACAGACTGACCGTTCAGTTACGccgtttttaacttttaacattcAACTGTGGGGCGGAAAAAATGATTGTGAGGGGGGGaaataagctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtggggttagGCTGAATTCTTCTCTGTGTCTCAGTTCTTTGgatttgttagaatttgtttttgttgtttttgttcccagtttgtaattgtaattttaatttatgtttttaaattatgtccagatgttttatttattccggtgtgtgtttggtgcCCCTCCCCTGAGCGCGAGAGTGTGGCGCGAGAGCGGCTGGTTGAGTTGTGAAAGCTGGGTGATAAAGAAGTGCAGGATGAGGAGGATTCTCAGTATTGCAGAACTCAAAACTGGTGGGACTGATTTTCTGATCAAAGTGGTCTTAATGTGCTCCTTCTTTCATTaacctcctcctcttctttttcctcctcctgctctttctcttccatctgctctttctccatctccacctactcttcctcctcctcatctttctcctcttcttcctcctcctcctctttctcttcctcctcctcttcttcctcctcctcttcttcctcctccttttcttcctcctcctcttcgttTTCGtcctcctctccttcttcctcctcctcttttactctccctcctcctccttttcttcCTCCTGCTCATCCTCTTTCTCTTGTCCCCCTCCTCCACTTCCTTCTTtacctcctcttcttcctcctcatctttgtcctcttcttcttcctcctcctcctctttctcctcttcctcctccttttactctccctcctcctcttcctctttctcttgtCCCCCTCCTCCACTTCATTCTTtacctcctcttcttcctcctcctcttcctcctcatctttgtcctctccttcttcctcctcctcctcttcctcctcatctttgtcctctccttcttcctccttttcttcctcctcctcatcctcttcctcttgTCCCCCTCCTCCACTTCCTTCTTTACCTCCTCCTCATCTTTgtcctctttttcttcctcctcctccttttctttctcctccttaTCCTCTTTCTCTcgtcctcctcttcttcctcctcctcctccaatcACTGAGCTCCGATATTTTgtttacagagaaacagagaatatGAATTGTGTGATATATAAAGCTATAAACCACTGCACACCAGCTTCCTCTGTCCTCTTTAATCAATAAAGGCAATAgtactgctcacacacacacacacacacacacacagccaaacaGCTCCTCCCACCTCCGGCACACTGGCTGAGGAACCAATCACCTTCCTCTGTTTCCTACAGAGCCCCTGATTGGACATggtgtattattttttcccaaaaaacaaaaagtgagcaccacatactaaatgATGAGtcccagatactaagtggtgctGAGCATGAGATACTAGgtagtgagcaccacatactgaGAGGTGAGCATCACATGATCAGTACCAGATAGTAATTGGTGAGTGTCCCATACTAAATGGTGAGCACCTGATACTAattggtgagcaccacatactaattGTTGAGTACCACATACTGCAAGGTTGAGCTCCAGATACTAAGTGATGAGCACCAGCTACTATATGGTGAGCTCCAGATACTAGTGTAAGTGGTGAGCAACACATACTAAACGATTACCAGACACTAAGTGGCCAGCACTAGATACTACTTTAAATGATGAACAACACAAATAtgaagtggtgagcaccagatattaAGTGGTAAGCACCATATACAAATAAGTGAGTACCAGATACTAAGCAGTAAGccccacatactaagtggttaTCTCTAATGttaagcaccacatactaagcaCCACTTGAGCTAACAACTAGTAACTGGTGCACactacttagtatctggtgAGCACCTCTtttgtatgttaaaataaatacaccatGTCTCTTCAGTGCTTTGCTGATCCCCCTCTTTTTGCATGCAGATAAAGAAGAAAAGCTCAGCATTGTTTTCTAACATCACACAGATCCTCcttttatatgtatgtttattatgAGTAATGTTTGCAAGTTCGCTTCCTGTAAATACATCAAAAAACATACCAATATATGGAGAGTCATTTGTGTTAAAGAGAATGTTCTGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU76927 True 3343 lncRNA 0.41 2 36600038 36603428

Neighbor

gene id symbol gene type direction distance location
med27 med27,LOC107665006,LOC107557205,LOC107725311,LOC107757301 coding downstream 107324 36412872 ~ 36492714 (-)
LOC103035014 rapgef1,rapgef1a,LOC108265900,LOC107557186,LOC107598978 coding downstream 214541 36344602 ~ 36385497 (-)
anapc7 anapc7 coding downstream 259535 36332468 ~ 36340503 (-)
c6h9orf116 LOC103023176 coding downstream 390379 36208216 ~ 36209659 (-)
LOC103036273 pip5k1bb,LOC108412809,LOC108265367,LOC105901155,LOC107664977,LOC106585038 coding downstream 529043 36016893 ~ 36070995 (-)
LOC103045855 LOC108438352,LOC108265896 coding upstream 1979 36605407 ~ 36641563 (-)
LOC103045561 phf19,LOC107557185,LOC107599052,LOC106585785 coding upstream 151738 36755166 ~ 36778310 (-)
LOC103045252 LOC108438351 coding upstream 193302 36796730 ~ 36818211 (-)
LOC107197187 NA coding upstream 440373 37043801 ~ 37048616 (-)
slc2a6 slc2a6,LOC107599026 coding upstream 447292 37050720 ~ 37061698 (-)
G57010 NA non-coding downstream 187289 36411235 ~ 36412749 (-)
G57013 NA non-coding downstream 191586 36408175 ~ 36408452 (-)
G57001 NA non-coding downstream 259002 36298059 ~ 36341036 (-)
G57000 NA non-coding downstream 268470 36314025 ~ 36331568 (-)
G56982 NA non-coding downstream 366692 36231079 ~ 36233346 (-)
G57043 NA non-coding upstream 222339 36825767 ~ 36839252 (-)
G57107 NA non-coding upstream 439899 37043327 ~ 37058088 (-)
G57121 nras,LOC107598969,LOC107725308 non-coding upstream 514016 37117444 ~ 37207042 (-)
G57147 dennd2c,LOC108438557,LOC107665005,LOC107674357,LOC107566809,LOC107734514,LOC107598967 non-coding upstream 571873 37175301 ~ 37181186 (-)
G57149 bcas2,LOC107566810,LOC107734517,LOC107674303 non-coding upstream 581012 37184440 ~ 37186552 (-)
G57014 NA other downstream 196740 36402850 ~ 36403298 (-)
G56987 atp2a2,atp2a2a,LOC108265716,LOC107580452 other downstream 279343 36319056 ~ 36320695 (-)
LOC103023491 fnbp1,LOC107599022,LOC108264955 other downstream 338493 36226129 ~ 36261545 (-)
unc45b unc45b other downstream 592051 35993525 ~ 36007987 (-)
LOC103036583 zgc:103670,LOC108412807,LOC107725322,LOC107598984,LOC107698990,LOC107720814,LOC107557201,LOC108265363 other downstream 607536 35971730 ~ 35992502 (-)
LOC107196826 LOC108438352,LOC106580127,LOC108265896,LOC106585786 other upstream 76738 36680166 ~ 36746634 (-)
LOC111192678 phf19 other upstream 181880 36785308 ~ 36792444 (-)
brpf3 brpf3,LOC108265695 other upstream 677685 37281113 ~ 37299607 (-)
LOC103043112 LOC108438563,LOC108265696,LOC107725303,LOC107653398,LOC107598961,LOC107674288,LOC107734522,LOC107570980,LOC105889772 other upstream 698619 37302047 ~ 37326736 (-)
LOC111192682 NA other upstream 1657689 38261117 ~ 38305466 (-)

Expression


Co-expression Network