G57088


Basic Information

Item Value
gene id G57088
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 37230990 ~ 37233036 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU77018
cagagACCACTtcaagtttctgaatcagtttctcttattttgctatttataggtatatgtttgagtaaaattagtaaaattattttattctacaaactgtggacaacatttctctcaaataacaaataaaaattttgtcatttagagcatttatttgcaggaaatgagaaatggctaaacaaattaatattcataaagttttaggagttcaaaaagcaatattttgtggaataatcctgatttttaaactgtttttattcatcttggcatcatgttctcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgcaaaaattcaattaatggcttgtgatcatccgtcttcctcttgattatattccagaggttttcaatttggcaaaatcagagaaactcatcgtttttaactggtctcttattataatttttttccagagctgtataaatttttatatatagtacATAGACTGCTGCAGTGTTTCATGTAGTCAAGCTGCtgaaattcagtgttttcttaGTGATCCTCACGGGTTCCCAGATGTTCCACATTTTggctcttttttaattttttatatatttttatacagattGTCTATTCGTGTGGAGCAaacaaattcaataaaaaatctGGACCATCTGTGATTCCCTCAGAACcacaataaaacacacttaaCCGTGTTAAACCATGCATCCTTTCAGATATTTCTAAAGATTAAAAATCCAAGTCCATATATCATGTGCGGTTTATTTGAATAGTTGTGTCAGTAAAGACTGGCTCCCCAGGCTGAGATTAAGTCCAGtcctgaactgagttttattttAATCGAGAATCTCCATTTAGAGAGATCTAGAAAAGTCTGGACTAGGGTTAAATTCTTCCCAGGAAGCCAGCCcttactgtttattatattatatttattacagttatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU77018 True 955 lncRNA 0.32 2 37230990 37233036

Neighbor

gene id symbol gene type direction distance location
bcas2 bcas2,LOC107674303,LOC107734517,LOC107664982,LOC107725297 coding upstream 42274 37184419 ~ 37188716 (+)
LOC103044036 dennd2c,LOC108438557,LOC107566809,LOC107725285 coding upstream 48467 37151249 ~ 37182523 (+)
ampd1 ampd1,LOC107664993 coding upstream 80951 37126935 ~ 37150039 (+)
nras nras,LOC107598969,LOC107725308 coding upstream 104970 37117419 ~ 37126020 (+)
LOC103040231 asb13,asb13b,LOC108266053,LOC107734516,LOC107725307,LOC107599049,LOC107664994 coding upstream 115582 37111541 ~ 37115408 (+)
pqlc2 pqlc2 coding downstream 7638 37240674 ~ 37250970 (+)
LOC103043413 LOC108438559 coding downstream 21802 37254838 ~ 37278390 (+)
LOC103038870 LOC108438573,LOC107653415 coding downstream 560287 37793323 ~ 37800678 (+)
LOC103037590 NA coding downstream 864518 38097554 ~ 38137323 (+)
LOC111192680 plxna3,LOC108410726,LOC106572068 coding downstream 941935 38174971 ~ 38205601 (+)
G56859 NA non-coding upstream 355643 36807703 ~ 36875347 (+)
G56863 NA non-coding upstream 397944 36825767 ~ 36833046 (+)
G56862 NA non-coding upstream 401500 36827530 ~ 36829490 (+)
G56853 NA non-coding upstream 458119 36770816 ~ 36772871 (+)
G56852 NA non-coding upstream 479349 36749089 ~ 36751641 (+)
G57209 NA non-coding downstream 155053 37388089 ~ 37391366 (+)
G57212 NA non-coding downstream 240960 37473996 ~ 37474778 (+)
G57227 NA non-coding downstream 244196 37477232 ~ 37548787 (+)
G57229 NA non-coding downstream 253335 37486371 ~ 37546259 (+)
G57239 NA non-coding downstream 375480 37608516 ~ 37608801 (+)
G57066 NA other upstream 225192 37005273 ~ 37005798 (+)
G56701 pola2,LOC107710902,LOC107657899 other upstream 1266480 35956104 ~ 35964510 (+)
G56504 NA other upstream 1772113 35420718 ~ 35458877 (+)
LOC103032256 dynll1,LOC103397138,LOC107554284,LOC107559583,LOC100698873 other upstream 1946719 35276079 ~ 35284271 (+)
ikbkb ikbkb,vdac3,LOC107560056,LOC107671013,LOC107754399 other upstream 1958462 35226485 ~ 35272528 (+)
agtpbp1 agtpbp1 other downstream 1876208 39109244 ~ 39153476 (+)
frmd3 frmd3,LOC107678471 other downstream 2059035 39292071 ~ 39370585 (+)
LOC103039219 iqsec2,LOC107747221,LOC107683900,LOC107702804,LOC108265842 other downstream 2734054 39967090 ~ 40090271 (+)
G57664 NA other downstream 2811617 40044653 ~ 40046467 (+)
G57856 tp73 other downstream 3442004 40675040 ~ 40680555 (+)

Expression


Co-expression Network