G57147 (dennd2c,LOC108438557,LOC107665005,LOC107674357,LOC107566809,LOC107734514,LOC107598967)


Basic Information

Item Value
gene id G57147
gene name dennd2c,LOC108438557,LOC107665005,LOC107674357,LOC107566809,LOC107734514,LOC107598967
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 37175301 ~ 37181186 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU77107
TCTCGGTCCTGGATGAAGCCAGCGAACATCTGTGTGTCCATGAAGAGCTGGAGGAACTGGCGGACCCCGCGGGACGGATGAGACTTCCTGAACGTGTCTCTGTTCAGCTCGCGGACGCCGCTGCTCGTCCCCGTCTCGCTAATGTGCAGAGAATAATGTCCCACCAGCTCCACGAAGAAACGCACAAACGCCTCCGACACCAGAGCACTCAGATCACACTCCACTCCTCTCCTGTCATCTTCACTGTGCTCCAGTATCTCCTCCCGATTCTCCAGGACTTCCTGTAGGGCTGCTTGTAGTTTACTCGGAAGGATACAGTCCTCGTCTCCCagCTGAACCACAAACTTGTCCGCACACAGGTCCACGATGAGCACCTCTTCGATGGGCAGGTCCAGCAGCTGAGGCAGAGACGGTGAGAGAACCCCCAGGAGGAAGGGGGTGGGAGAGCAGCTGATGTCCAGCATGCTGGCGGGCAGCACGGGCACGAAGGTGTGCTGCCAGGTGAACGGGTAGAGCAGCGCCAGGGCAGAGTGAGCACAGCGAGACAAAG

Function

symbol description
dennd2c Predicted to enable guanyl-nucleotide exchange factor activity. Orthologous to human DENND2C (DENN domain containing 2C).

NR:

description
PREDICTED: DENN domain-containing protein 2C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU77107 True 550 lncRNA 0.59 4 37175301 37181186

Neighbor

gene id symbol gene type direction distance location
slc2a6 slc2a6,LOC107599026 coding downstream 113603 37050720 ~ 37061698 (-)
LOC107197187 NA coding downstream 126685 37043801 ~ 37048616 (-)
LOC103045252 LOC108438351 coding downstream 357090 36796730 ~ 36818211 (-)
LOC103045561 phf19,LOC107557185,LOC107599052,LOC106585785 coding downstream 396991 36755166 ~ 36778310 (-)
LOC103045855 LOC108438352,LOC108265896 coding downstream 533738 36605407 ~ 36641563 (-)
LOC111192681 si:ch211-240g9.1,LOC108438565,LOC108264952,LOC107598959,LOC107653411,LOC105925911,LOC100700110 coding upstream 209256 37390442 ~ 37476012 (-)
tbc1d22b tbc1d22b,LOC108438566,LOC107653399,LOC107674367,LOC107734531 coding upstream 366573 37547759 ~ 37599298 (-)
LOC103031835 pim1,LOC103031835,LOC108438567,LOC107584899,LOC107598956,LOC107734527,LOC108265925,LOC107674355,LOC107725309 coding upstream 449871 37631057 ~ 37635455 (-)
LOC103047788 NA coding upstream 627362 37808548 ~ 37842410 (-)
kcnd1 kcnd1,LOC107584898,LOC107601760 coding upstream 672594 37853780 ~ 37958375 (-)
G57107 NA non-coding downstream 117213 37043327 ~ 37058088 (-)
G57043 NA non-coding downstream 336049 36825767 ~ 36839252 (-)
G57012 NA non-coding downstream 571873 36600038 ~ 36603428 (-)
G57010 NA non-coding downstream 762552 36411235 ~ 36412749 (-)
G57013 NA non-coding downstream 766849 36408175 ~ 36408452 (-)
G57149 bcas2,LOC107566810,LOC107734517,LOC107674303 non-coding upstream 3254 37184440 ~ 37186552 (-)
G57166 trim33 non-coding upstream 49012 37230198 ~ 37237667 (-)
G57176 pqlc2 non-coding upstream 59469 37240655 ~ 37245381 (-)
G57178 NA non-coding upstream 68674 37249860 ~ 37253799 (-)
G57199 NA non-coding upstream 122684 37303870 ~ 37304244 (-)
LOC111192678 phf19 other downstream 382857 36785308 ~ 36792444 (-)
LOC107196826 LOC108438352,LOC106580127,LOC108265896,LOC106585786 other downstream 428667 36680166 ~ 36746634 (-)
G57014 NA other downstream 772003 36402850 ~ 36403298 (-)
G56987 atp2a2,atp2a2a,LOC108265716,LOC107580452 other downstream 854606 36319056 ~ 36320695 (-)
LOC103023491 fnbp1,LOC107599022,LOC108264955 other downstream 913756 36226129 ~ 36261545 (-)
brpf3 brpf3,LOC108265695 other upstream 99927 37281113 ~ 37299607 (-)
LOC103043112 LOC108438563,LOC108265696,LOC107725303,LOC107653398,LOC107598961,LOC107674288,LOC107734522,LOC107570980,LOC105889772 other upstream 120861 37302047 ~ 37326736 (-)
LOC111192682 NA other upstream 1079931 38261117 ~ 38305466 (-)
LOC103030299 fkbp1aa,fkb1b,fkbp1a,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 2340358 39521544 ~ 39562921 (-)
G57727 kdm5c,LOC107550909,LOC107747206,LOC107570512 other upstream 2936603 40117789 ~ 40119095 (-)

Expression


Co-expression Network