G57149 (bcas2,LOC107566810,LOC107734517,LOC107674303)


Basic Information

Item Value
gene id G57149
gene name bcas2,LOC107566810,LOC107734517,LOC107674303
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 37184440 ~ 37186552 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU77110
aaaaaaaaaaaacacaataattaaaactaaaagtcAAAAGCTACTACAGTTTAATACGTACTCATTAGAAAACTTCCAGGCGTTGGTTCCGTACTCGGCCATCAGATCAAGGTTTTCTATTCGCACGGCCTGATGCTCCAGCTGGGCCATCGAGTTATTCACACAATCCTGCCACGCTGTGATGTCATTCTTCTGTCCGGATGAGGGGGCTGGAAGCTCGTATCTCTTCATGCTGAGCAGCTCCATAGGTTGGCGAGCACCAAGCCTCTCAAACTCGTTCCTCATTATCTCAGTCTCAAACGCAGAGAAATCAGGTGTTGGCAGGTAACTCAGGTAATTCTTTGTAGGCCGGTATCGCCGggtctcctcctccaccaaGGCTGCAGCCGCCTCCCGGACTCCCGGAGCGTCATAACCCTGATCAAAATACGGCAGCGCGTCCACGAACACCTCACCGGCTACCGACGAGGTTCCAGCCATGTTTCTCCCGCAGcggctccagcagcagcagcgcgcaGCCGCCCGCCTGAGCCCTTCACCCCGCAGCGGAACCAGCGCCGCCCGC

Function

symbol description
bcas2 Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in nucleus. Predicted to be part of Prp19 complex and U2-type catalytic step 2 spliceosome. Is expressed in several structures, including alar plate midbrain region; blood; optic vesicle; solid lens vesicle; and ventral mesoderm. Human ortholog(s) of this gene implicated in breast cancer. Orthologous to human BCAS2 (BCAS2 pre-mRNA processing factor).

NR:

description
PREDICTED: pre-mRNA-splicing factor SPF27

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU77110 True 565 lncRNA 0.54 4 37184440 37186552

Neighbor

gene id symbol gene type direction distance location
slc2a6 slc2a6,LOC107599026 coding downstream 122742 37050720 ~ 37061698 (-)
LOC107197187 NA coding downstream 135824 37043801 ~ 37048616 (-)
LOC103045252 LOC108438351 coding downstream 366229 36796730 ~ 36818211 (-)
LOC103045561 phf19,LOC107557185,LOC107599052,LOC106585785 coding downstream 406130 36755166 ~ 36778310 (-)
LOC103045855 LOC108438352,LOC108265896 coding downstream 542877 36605407 ~ 36641563 (-)
LOC111192681 si:ch211-240g9.1,LOC108438565,LOC108264952,LOC107598959,LOC107653411,LOC105925911,LOC100700110 coding upstream 203890 37390442 ~ 37476012 (-)
tbc1d22b tbc1d22b,LOC108438566,LOC107653399,LOC107674367,LOC107734531 coding upstream 361207 37547759 ~ 37599298 (-)
LOC103031835 pim1,LOC103031835,LOC108438567,LOC107584899,LOC107598956,LOC107734527,LOC108265925,LOC107674355,LOC107725309 coding upstream 444505 37631057 ~ 37635455 (-)
LOC103047788 NA coding upstream 621996 37808548 ~ 37842410 (-)
kcnd1 kcnd1,LOC107584898,LOC107601760 coding upstream 667228 37853780 ~ 37958375 (-)
G57147 dennd2c,LOC108438557,LOC107665005,LOC107674357,LOC107566809,LOC107734514,LOC107598967 non-coding downstream 3254 37175301 ~ 37181186 (-)
G57107 NA non-coding downstream 126352 37043327 ~ 37058088 (-)
G57043 NA non-coding downstream 345188 36825767 ~ 36839252 (-)
G57012 NA non-coding downstream 581012 36600038 ~ 36603428 (-)
G57010 NA non-coding downstream 771691 36411235 ~ 36412749 (-)
G57166 trim33 non-coding upstream 43646 37230198 ~ 37237667 (-)
G57176 pqlc2 non-coding upstream 54103 37240655 ~ 37245381 (-)
G57178 NA non-coding upstream 63308 37249860 ~ 37253799 (-)
G57199 NA non-coding upstream 117318 37303870 ~ 37304244 (-)
G57201 NA non-coding upstream 122117 37308669 ~ 37309114 (-)
LOC111192678 phf19 other downstream 391996 36785308 ~ 36792444 (-)
LOC107196826 LOC108438352,LOC106580127,LOC108265896,LOC106585786 other downstream 437806 36680166 ~ 36746634 (-)
G57014 NA other downstream 781142 36402850 ~ 36403298 (-)
G56987 atp2a2,atp2a2a,LOC108265716,LOC107580452 other downstream 863745 36319056 ~ 36320695 (-)
LOC103023491 fnbp1,LOC107599022,LOC108264955 other downstream 922895 36226129 ~ 36261545 (-)
brpf3 brpf3,LOC108265695 other upstream 94561 37281113 ~ 37299607 (-)
LOC103043112 LOC108438563,LOC108265696,LOC107725303,LOC107653398,LOC107598961,LOC107674288,LOC107734522,LOC107570980,LOC105889772 other upstream 115495 37302047 ~ 37326736 (-)
LOC111192682 NA other upstream 1074565 38261117 ~ 38305466 (-)
LOC103030299 fkbp1aa,fkb1b,fkbp1a,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 2334992 39521544 ~ 39562921 (-)
G57727 kdm5c,LOC107550909,LOC107747206,LOC107570512 other upstream 2931237 40117789 ~ 40119095 (-)

Expression


Co-expression Network