G57176 (pqlc2)


Basic Information

Item Value
gene id G57176
gene name pqlc2
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 37240655 ~ 37245381 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU77138
CCGGTTCCCACTTTATGCCGTAGCGAGTAATAGCCATACATACTGAGCATCATAAGATCAGCACAGACGTAATACACCGCCGTGTACGTCTGAAGCGGAAGCTGGTCAGCCAGGAAAGAGCCGATGAGATTACAGGAGTCTCCCGCCAGCCACAGCAACAGAAACCAGATGGACAAAGCGCTGTCCATGTTCCCAGTCTTACAGGATTTATAGTACTGCGGGAAACTGGACACCATAAAACACACTATGGACAGGAGGCCCAGGATAACGCTGGACATGTCCCGAGCGTCTTGTGCACATTCTCCAAGCCCGTTCCAAACCCACTCTGATCCGTTTGGGCAGAGAGAGCTGAAGTTTCCATTCCCACCAAACAGAGATCCATCACGAGAAGACCCTCCATCAGACATAACGCGGAGATCAGCAGTTTCCAACAGTCCCAACAGCACAAACACAACCCCGCACAAACAACCAGCCTGTAACAACACCGCTCTCCGCGCCCGCTGATTGGATGACTGGCGGTGACGTCAGGCACGAGTCATCAATACGGAAACAGAACAACGCGGATACCTCagcaaaactaagaaaaaaCTTAGAGTCAGAGAGCCTGGCAGAGCTGAGCCACTCAGTTACAGCCtttactgacacacacacactctctctcacacacacacactgatcagcTGAC

Function

symbol description
pqlc2 solute carrier family 66 (lysosomal lysine-arginine transporter), member 1

NR:

description
PREDICTED: lysosomal amino acid transporter 1 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU77138 True 685 lncRNA 0.52 5 37240655 37245381

Neighbor

gene id symbol gene type direction distance location
slc2a6 slc2a6,LOC107599026 coding downstream 178957 37050720 ~ 37061698 (-)
LOC107197187 NA coding downstream 192039 37043801 ~ 37048616 (-)
LOC103045252 LOC108438351 coding downstream 422444 36796730 ~ 36818211 (-)
LOC103045561 phf19,LOC107557185,LOC107599052,LOC106585785 coding downstream 462345 36755166 ~ 36778310 (-)
LOC103045855 LOC108438352,LOC108265896 coding downstream 599092 36605407 ~ 36641563 (-)
LOC111192681 si:ch211-240g9.1,LOC108438565,LOC108264952,LOC107598959,LOC107653411,LOC105925911,LOC100700110 coding upstream 145061 37390442 ~ 37476012 (-)
tbc1d22b tbc1d22b,LOC108438566,LOC107653399,LOC107674367,LOC107734531 coding upstream 302378 37547759 ~ 37599298 (-)
LOC103031835 pim1,LOC103031835,LOC108438567,LOC107584899,LOC107598956,LOC107734527,LOC108265925,LOC107674355,LOC107725309 coding upstream 385676 37631057 ~ 37635455 (-)
LOC103047788 NA coding upstream 563167 37808548 ~ 37842410 (-)
kcnd1 kcnd1,LOC107584898,LOC107601760 coding upstream 608399 37853780 ~ 37958375 (-)
G57166 trim33 non-coding downstream 2988 37230198 ~ 37237667 (-)
G57121 nras,LOC107598969,LOC107725308 non-coding downstream 33613 37117444 ~ 37207042 (-)
G57149 bcas2,LOC107566810,LOC107734517,LOC107674303 non-coding downstream 54103 37184440 ~ 37186552 (-)
G57147 dennd2c,LOC108438557,LOC107665005,LOC107674357,LOC107566809,LOC107734514,LOC107598967 non-coding downstream 59469 37175301 ~ 37181186 (-)
G57107 NA non-coding downstream 182567 37043327 ~ 37058088 (-)
G57178 NA non-coding upstream 4479 37249860 ~ 37253799 (-)
G57199 NA non-coding upstream 58489 37303870 ~ 37304244 (-)
G57201 NA non-coding upstream 63288 37308669 ~ 37309114 (-)
G57218 NA non-coding upstream 135695 37381076 ~ 37389419 (-)
G57225 NA non-coding upstream 200353 37445734 ~ 37446043 (-)
LOC111192678 phf19 other downstream 448211 36785308 ~ 36792444 (-)
LOC107196826 LOC108438352,LOC106580127,LOC108265896,LOC106585786 other downstream 494021 36680166 ~ 36746634 (-)
G57014 NA other downstream 837357 36402850 ~ 36403298 (-)
G56987 atp2a2,atp2a2a,LOC108265716,LOC107580452 other downstream 919960 36319056 ~ 36320695 (-)
LOC103023491 fnbp1,LOC107599022,LOC108264955 other downstream 979110 36226129 ~ 36261545 (-)
brpf3 brpf3,LOC108265695 other upstream 35732 37281113 ~ 37299607 (-)
LOC103043112 LOC108438563,LOC108265696,LOC107725303,LOC107653398,LOC107598961,LOC107674288,LOC107734522,LOC107570980,LOC105889772 other upstream 56666 37302047 ~ 37326736 (-)
LOC111192682 NA other upstream 1015736 38261117 ~ 38305466 (-)
LOC103030299 fkbp1aa,fkb1b,fkbp1a,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 2276163 39521544 ~ 39562921 (-)
G57727 kdm5c,LOC107550909,LOC107747206,LOC107570512 other upstream 2872408 40117789 ~ 40119095 (-)

Expression


Co-expression Network