G57178


Basic Information

Item Value
gene id G57178
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 37249860 ~ 37253799 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU77142
tggtttgatggcttgtgatcatccatcttcctcttgattatattccagaggttttcaatttggtggtctcttattttatccagagctgtatattgtatgtactgttttttgtatattatgtccaataaaaaacaaggaattttattttaccacataatttgaacacacaaactgtcccttacactgtatcagaatttcttttggaaaatggaccaatagaaattgtccaaaatgacctgaaatttacattaacttccattGACAGTTAAGTAGGTTTTATCTTTATTCTGTAAAGTTGCCACTTTGGAGATACTTTTTTCATTTGACAGCGACGACATAAGCAACAGATTGTACAACACTTCCATTGGTGAAGCATGAAACATTCAATCATTGATAGCctgttattatacagtttttatacAACATACATACAATTTTCTCAAGCAAAAACAAGTGGAAAGCAAATAAAGCCTCAAATATgatgaataatgttttaatgttggaGATTTCTCAGGGCAGAACCATGAACTTCTTGGTCTGTGTATGTTAATTATGGATAAACACATTGCGGTTATAACATTAATCAACATTTACTGATAGTATTGAGTTTTTCTGAACGTGCAACATCAATAAACAATGTTAAACGGCAGATGTGTAAGCTCTGATTTCTGATATCTGACTGAGAGAGCTTCAGAAGAGTAGCACAGAAGTCTACGTAATTATGGCTCAATTATCAAGAGGCCACCAGTTAAGTCCAGCATGTGATCCATTAGCAATCCTGAAGGGCATAACTGGGTAGAATGGTCTTCTCTTTCCCTCCATCACTCTTCATGTAACAGAACCGgcagtgttttattagtgttgTTCTCCTCCGAGCGtgttgagctgtagagcagcgCTGCATCCAGTGGAAGTTTAATAAGATGCTCTCTTCCTCCCGGAGCGTGTGGTTTTGTGTAATAGTAGTTAGAGGGAATTGGACTAGGGttagaataaaaagaaaataataaaataatgaccaAAAAAACCTTCAAAAATGCTTTGCTGTAAAACATTTTGTGACTGAAACAGAGAATCCTTCACTGAGATCAAGGCAAAAAAATGAGCAGCAAAATCAATTAGGATAAAACAAAAGGACtgcattataaaaataaacttttttgggctaaaacaaacaaacaaaaaagccttttttaatcacattttttttcatgcatcttggcatcatgttctcctccaccagtcttacacactgcttttggataactttatgccactcttggagCAAAAATTCAGTCAGAGCATCCTTCACTGATATCAAGGCAAAACTTGAGCagcaaaatcaattaaaatgaaacaacaggactgaattataaaaata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU77142 True 1381 lncRNA 0.35 2 37249860 37253799

Neighbor

gene id symbol gene type direction distance location
slc2a6 slc2a6,LOC107599026 coding downstream 188162 37050720 ~ 37061698 (-)
LOC107197187 NA coding downstream 201244 37043801 ~ 37048616 (-)
LOC103045252 LOC108438351 coding downstream 431649 36796730 ~ 36818211 (-)
LOC103045561 phf19,LOC107557185,LOC107599052,LOC106585785 coding downstream 471550 36755166 ~ 36778310 (-)
LOC103045855 LOC108438352,LOC108265896 coding downstream 608297 36605407 ~ 36641563 (-)
LOC111192681 si:ch211-240g9.1,LOC108438565,LOC108264952,LOC107598959,LOC107653411,LOC105925911,LOC100700110 coding upstream 136643 37390442 ~ 37476012 (-)
tbc1d22b tbc1d22b,LOC108438566,LOC107653399,LOC107674367,LOC107734531 coding upstream 293960 37547759 ~ 37599298 (-)
LOC103031835 pim1,LOC103031835,LOC108438567,LOC107584899,LOC107598956,LOC107734527,LOC108265925,LOC107674355,LOC107725309 coding upstream 377258 37631057 ~ 37635455 (-)
LOC103047788 NA coding upstream 554749 37808548 ~ 37842410 (-)
kcnd1 kcnd1,LOC107584898,LOC107601760 coding upstream 599981 37853780 ~ 37958375 (-)
G57176 pqlc2 non-coding downstream 4479 37240655 ~ 37245381 (-)
G57166 trim33 non-coding downstream 12193 37230198 ~ 37237667 (-)
G57121 nras,LOC107598969,LOC107725308 non-coding downstream 42818 37117444 ~ 37207042 (-)
G57149 bcas2,LOC107566810,LOC107734517,LOC107674303 non-coding downstream 63308 37184440 ~ 37186552 (-)
G57147 dennd2c,LOC108438557,LOC107665005,LOC107674357,LOC107566809,LOC107734514,LOC107598967 non-coding downstream 68674 37175301 ~ 37181186 (-)
G57199 NA non-coding upstream 50071 37303870 ~ 37304244 (-)
G57201 NA non-coding upstream 54870 37308669 ~ 37309114 (-)
G57218 NA non-coding upstream 127277 37381076 ~ 37389419 (-)
G57225 NA non-coding upstream 191935 37445734 ~ 37446043 (-)
G57272 NA non-coding upstream 390401 37644200 ~ 37675261 (-)
LOC111192678 phf19 other downstream 457416 36785308 ~ 36792444 (-)
LOC107196826 LOC108438352,LOC106580127,LOC108265896,LOC106585786 other downstream 503226 36680166 ~ 36746634 (-)
G57014 NA other downstream 846562 36402850 ~ 36403298 (-)
G56987 atp2a2,atp2a2a,LOC108265716,LOC107580452 other downstream 929165 36319056 ~ 36320695 (-)
LOC103023491 fnbp1,LOC107599022,LOC108264955 other downstream 988315 36226129 ~ 36261545 (-)
brpf3 brpf3,LOC108265695 other upstream 27314 37281113 ~ 37299607 (-)
LOC103043112 LOC108438563,LOC108265696,LOC107725303,LOC107653398,LOC107598961,LOC107674288,LOC107734522,LOC107570980,LOC105889772 other upstream 48248 37302047 ~ 37326736 (-)
LOC111192682 NA other upstream 1007318 38261117 ~ 38305466 (-)
LOC103030299 fkbp1aa,fkb1b,fkbp1a,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 2267745 39521544 ~ 39562921 (-)
G57727 kdm5c,LOC107550909,LOC107747206,LOC107570512 other upstream 2863990 40117789 ~ 40119095 (-)

Expression


Co-expression Network