LOC103043112 (LOC108438563,LOC108265696,LOC107725303,LOC107653398,LOC107598961,LOC107674288,LOC107734522,LOC107570980,LOC105889772)


Basic Information

Item Value
gene id LOC103043112
gene name LOC108438563,LOC108265696,LOC107725303,LOC107653398,LOC107598961,LOC107674288,LOC107734522,LOC107570980,LOC105889772
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 37302047 ~ 37326736 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU77163
caacTAATTTGATTTAGCTTaatgaattatattttaaattttattaaaaattgtgaaCTATGTACATATATACGTTTTCTGAATCTGAATTAATCTGATGTTTATTCAGCGGTGGACCTGCTGGAGAAGATGCTGGTTTTAGATGCAGGAGCTCGCCTCACTGCTGATGGAGCGCTGGCCCATAGTTATTTCAACGGCCTGAGGGATCCAGAGGACTGCCCGGAGCCTAAACCATATGATGACAGTTATGACAATGCTACACTGCCCCTAGAGGAGTGGAGACGACTATCATTTAAAGAAGTGAAGAGTTTTGTCCCGTTCCCGAGACGAGACTCGAAGAGGAGAAACACGCTGACGATGACTCAGTGAAGCTCTGCCTGCGGCTgattttacactattttaaagACACGTTTAAAGCAGAAGAACAGTGTGGAAGCTGTTTACACACTCAGCTGTTACAAACTGAAATATTTTCATGACAATCTACGAGAATCGATGATGAATGTTTGAGTTCTGTGGACCTGATAAGTGGACTTAAGGATGTACTGCTGTTACAGTGGTGGCTGGCTTTCGTTTGTTGCCAATTTGCCTTTAAGTGCTGTGTTGGAACAGTTGTTTAAAAAGTAGTTAAGATGTTTTCTTTGACATTGTGGCTTCTCGTGCTCAGAAGAAAAGTGTTATCACGTTGGaggttgtaaataaatacagattctTGCTGATGCTTAAGACCTTAAGAGCTGTACAGTTTTTCACTATGCCCATCTGTCAAAATATCATTTGTCAGAATTTAGCGAATTAAAGTTAGTCTATTAAGAaaatctttgtttgttttcttattcGAATTGCCAAAAGCACTATAAAACAAATccagattatatttttaattattagtataAGAAAAGGTCCTGAAGCAGAGCAGTTTTAAGAGACACACCTGCACAACTTTTTCACCTttactgttgaaaaaaaaaatagatcttGGCTCTTGTTCTTTACACTTTCAAAAAGTTTCTCATGACAAAtgaaccaataaaaatgctccaaaatgact
>TU77164
caacTAATTTGATTTAGCTTaatgaattatattttaaattttattaaaaattgtgaaCTATGTACATATATACGTTTTCTGAATCTGAATTAATCTGATGTTTATTCAGCGGTGGACCTGCTGGAGAAGATGCTGGTTTTAGATGCAGGAGCTCGCCTCACTGCTGATGGAGCGCTGGCCCATAGTTATTTCAACGGCCTGAGGGATCCAGAGGACTGCCCGGAGCCTAAACCATATGATGACAGTTATGACAATGCTACACTGCCCCTAGAGGAGTGGAGACGACTATCATTTAAAGAAGTGAAGAGTTTTGTCCCGTTCCCGAGACGAGACTCGAAGAGGAGAAACACGCTGACGATGACTCAGTGAAGCTCTGCCTGCGGCTgattttacactattttaaagACACGTTTAAAGCAGAAGAACAGTGTGGAAGCTGTTTACACACTCAGCTGTTACAAACTGAAATATTTTCATGACAATCTACGAGAATCGATGATGAATGTTTGAGTTCTGTGGACCTGATAAGTGGACTTAAGGATGTACTGCTGTTACAGTGGTGGCTGGCTTTCGTTTGTTGCCAATTTGCCTTTAAGTGCTGTGTTGGAACAGTTGTTTAAAAAGTAGTTAAGATGTTTTCTTTGACATTGTGGCTTCTCGTGCTCAGAAGAAAAGTGTTATCACGTTGGaggttgtaaataaatacagattctTGCTGATGCTTAAGACCTTAAGAGCTGTACAGTTTTTCACTATGCCCATCTGTCAAAATATCATTTGTCAGAATTTAGCGAATTAAAGTTAGTCTATTAAGAaaatctttgtttgttttcttattcGAATTGCCAAAAGCACTATAAAACAAATccagattatatttttaattattagtataAGAAAAGGTCCTGAAGCAGAGCAGTTTTAAGAGACACACCTGCACAACTTTTTCACCTttactgttgaaaaaaaaaatagatcttGGCTCTTGTTCTTTACACTTTCAAAAAGTTTCTCATGACAAAtgaaccaataaaaatgctccaaaatgacttacaatacaattgttttaatttgacttccattacattgttttttgttttttttttgtaaatgtctcctgtaaaattacaatttatta
>XM_022670613.1
TCCCCCCTTGCCGTAGGGCGACTTCAGCAGACGGAGCGAGCGAGCGCGAGACTCCAGCCCGGTTTTCACGTCGTCGTCGTCGCGCGCGCGCACCGCGATAATGCTGGCCGGGAGCCGCGCGAGCTGCAGGGCGGTACGGTAGACGGGCGGGTTGTTTCCCCGCGCGAGCTCGAGTTCACCCATGGAGCCGCAGCCCGGATTCACGCGCGAGGAGATCAACAGCACGGTGTGGGAGGTGCCGGAGAAGTACGTGCGCTTAAAGCAGATTGGGACCGGAGCCTACGGTACCGTGTGCTCAACCATCAATGAGAAGACCAAAGAGAAAGTGGCCATCAAGAAGCTGCACAGGCCCTTCCAGTCGGAGATCTTTGCGAAGAGGGCGTACCGGGAGCTGCGGCTGCTCAAACACATGAAGCACGAGAATGTGATCGGACTGCTGGACGTGTTCACTCCCGCCACCCGCCTGGAAACCTTTCAGGACTTCTACCTGGTGATGCCGTACATGTACACGGACCTGTCCAAGGTTCGAGGTCTGCTCTCAGAGGACCGGGTTCAGTTCCTCGTCTATCAGATGCTCTGTGGACTGAAGTACATTCACAGCGCTGGCATCATTCACAGGgatCTTAAGCCCGGGAACCTGGCTGTAAATCAGGACTGTGAGCTGAAGATCCTGGACTTCGGCCTGGCGCGGCATGCAGATGCAGAGATGACGGGTTACGTTGTGACGAGGTGGTACAGAGCGCCGGAGGTCATTCTGAACTGGATGCACTACACCCAGACAGTGGATATCTGGTCAGTTGGGTGCATAATGGGAGAAATGTTCAATGGCAAGACACTCTTCAAGGGAAAAGACTATTTGCTAGTTTACCAGATTCAATTGTTGGCAtcatttacaaataaaacaaataaaatattttatcaacTAATTTGATTTAGCTTaatgaattatattttaaattttattaaaaattgtgaaCTATGTACATATATACGTTTTCTGAATCTGAATTAATCTGATGTTTATTCAGCGGTGGACCTGCTGGAGAAGATGCTGGTTTTAGATGCAGGAGCTCGCCTCACTGCTGATGGAGCGCTGGCCCATAGTTATTTCAACGGCCTGAGGGATCCAGAGGACTGCCCGGAGCCTAAACCATATGATGACAGTTATGACAATGCTACACTGCCCCTAGAGGAGTGGAGACGACTATCATTTAAAGAAGTGAAGAGTTTTGTCCCGTTCCCGAGACGAGACTCGAAGAGGAGAAACACGCTGACGATGACTCAGTGAAGCTCTGCCTGCGGCTgattttacactattttaaagACACGTTTAAAGCAGAAGAACAGTGTGGAAGCTGTTTACACACTCAGCTGTTACAAACTGAAATATTTTCATGACAATCTACGAGAATCGATGATGAATGTTTGAGTTCTGTGGACCTGATAAGTGGACTTAAGGATGTACTGCTGTTACAGTGGTGGCTGGCTTTCGTTTGTTGCCAATTTGCCTTTAAGTGCTGTGTTGGAACAGTTGTTTAAAAAGTAGTTAAGATGTTTTCTTTGACATTGTGGCTTCTCGTGCTCAGAAGAAAAGTGTTATCACGTTGGaggttgtaaataaatacagattctTGCTGATGCTTAAGACCTTAAGAGCTGTACAGTTTTTCACTATGCCCATCTGTCAAAATATCATTTGTCAGAATTTAGCGAATTAAAGTTAGTCTATTAAGAaaatctttgtttgttttcttattcGAATTGCCAAAAGCACTATAAAACAAATccagattatatttttaattattagtataAGAAAAGGTCCTGAAGCAGAGCAGTTTTAAGAGACACACCTGCACAACTTTTTCACCTttactgttgaaaaaaaaaatagatcttGGCTCTTGTTCTTTACACTTTCAAAAAGTTTCTCATGACAAAtgaaccaataaaaatgctccaaaatgacttacaa

Function

NR:

description
PREDICTED: mitogen-activated protein kinase 13-like isoform X1

GO:

id name namespace
GO:0000165 MAPK cascade biological_process
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004707 MAP kinase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU77163 False 1051 lncRNA 0.37 2 37302134 37303721
TU77164 False 1138 lncRNA 0.36 2 37302047 37303721
XM_022670613.1 True 1975 mRNA 0.46 10 37302129 37326736

Neighbor

gene id symbol gene type direction distance location
slc2a6 slc2a6,LOC107599026 coding downstream 240349 37050720 ~ 37061698 (-)
LOC107197187 NA coding downstream 253431 37043801 ~ 37048616 (-)
LOC103045252 LOC108438351 coding downstream 483836 36796730 ~ 36818211 (-)
LOC103045561 phf19,LOC107557185,LOC107599052,LOC106585785 coding downstream 523737 36755166 ~ 36778310 (-)
LOC103045855 LOC108438352,LOC108265896 coding downstream 660484 36605407 ~ 36641563 (-)
LOC111192681 si:ch211-240g9.1,LOC108438565,LOC108264952,LOC107598959,LOC107653411,LOC105925911,LOC100700110 coding upstream 63706 37390442 ~ 37476012 (-)
tbc1d22b tbc1d22b,LOC108438566,LOC107653399,LOC107674367,LOC107734531 coding upstream 221023 37547759 ~ 37599298 (-)
LOC103031835 pim1,LOC103031835,LOC108438567,LOC107584899,LOC107598956,LOC107734527,LOC108265925,LOC107674355,LOC107725309 coding upstream 304321 37631057 ~ 37635455 (-)
LOC103047788 NA coding upstream 481812 37808548 ~ 37842410 (-)
kcnd1 kcnd1,LOC107584898,LOC107601760 coding upstream 527044 37853780 ~ 37958375 (-)
G57178 NA non-coding downstream 48248 37249860 ~ 37253799 (-)
G57176 pqlc2 non-coding downstream 56666 37240655 ~ 37245381 (-)
G57166 trim33 non-coding downstream 64380 37230198 ~ 37237667 (-)
G57149 bcas2,LOC107566810,LOC107734517,LOC107674303 non-coding downstream 115495 37184440 ~ 37186552 (-)
G57147 dennd2c,LOC108438557,LOC107665005,LOC107674357,LOC107566809,LOC107734514,LOC107598967 non-coding downstream 120861 37175301 ~ 37181186 (-)
G57218 NA non-coding upstream 54340 37381076 ~ 37389419 (-)
G57225 NA non-coding upstream 118998 37445734 ~ 37446043 (-)
G57272 NA non-coding upstream 317464 37644200 ~ 37675261 (-)
G57351 NA non-coding upstream 519323 37846059 ~ 37846284 (-)
G57364 NA non-coding upstream 734488 38061224 ~ 38126192 (-)
brpf3 brpf3,LOC108265695 other downstream 2440 37281113 ~ 37299607 (-)
LOC111192678 phf19 other downstream 509603 36785308 ~ 36792444 (-)
LOC107196826 LOC108438352,LOC106580127,LOC108265896,LOC106585786 other downstream 555413 36680166 ~ 36746634 (-)
G57014 NA other downstream 898749 36402850 ~ 36403298 (-)
G56987 atp2a2,atp2a2a,LOC108265716,LOC107580452 other downstream 981352 36319056 ~ 36320695 (-)
LOC111192682 NA other upstream 934381 38261117 ~ 38305466 (-)
LOC103030299 fkbp1aa,fkb1b,fkbp1a,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 2194808 39521544 ~ 39562921 (-)
G57727 kdm5c,LOC107550909,LOC107747206,LOC107570512 other upstream 2791053 40117789 ~ 40119095 (-)
LOC103037008 LOC108442081,LOC105022382,LOC106567250 other upstream 2838664 40165400 ~ 40179141 (-)
tprg1l tprg1l,LOC107710788,LOC107678419,LOC107698845,LOC106513028 other upstream 3422005 40748741 ~ 40756014 (-)

Expression


Co-expression Network