G57218


Basic Information

Item Value
gene id G57218
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 37381076 ~ 37389419 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU77189
caaccacatccaacaggattaactgtggatgctgtaagaggaagctatctgaaagggatgttcgggtgctaacccggattgtatctaaaaaacagaaaccacggctgatcaaatcacacagaattcaatgtgcacctcaactctcctgtttccaccagaactgtccgtcaccacaatcaattattgtgctctaaaaccaggtgtttcagtttcattctccaacccctgtacgtcATTACATGATTACACAGTTACTGCCAAAAGCTAAAAAAGAAAACGGGAAGGCGTAATTACAGCagctacagtacagtatataagtcctgttttgtttcatttattcacatggaagtcaatgtacatgtaactctttctctctctttct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU77189 True 382 lncRNA 0.41 2 37381076 37389419

Neighbor

gene id symbol gene type direction distance location
slc2a6 slc2a6,LOC107599026 coding downstream 319378 37050720 ~ 37061698 (-)
LOC107197187 NA coding downstream 332460 37043801 ~ 37048616 (-)
LOC103045252 LOC108438351 coding downstream 562865 36796730 ~ 36818211 (-)
LOC103045561 phf19,LOC107557185,LOC107599052,LOC106585785 coding downstream 602766 36755166 ~ 36778310 (-)
LOC103045855 LOC108438352,LOC108265896 coding downstream 739513 36605407 ~ 36641563 (-)
LOC111192681 si:ch211-240g9.1,LOC108438565,LOC108264952,LOC107598959,LOC107653411,LOC105925911,LOC100700110 coding upstream 1023 37390442 ~ 37476012 (-)
tbc1d22b tbc1d22b,LOC108438566,LOC107653399,LOC107674367,LOC107734531 coding upstream 158340 37547759 ~ 37599298 (-)
LOC103031835 pim1,LOC103031835,LOC108438567,LOC107584899,LOC107598956,LOC107734527,LOC108265925,LOC107674355,LOC107725309 coding upstream 241638 37631057 ~ 37635455 (-)
LOC103047788 NA coding upstream 419129 37808548 ~ 37842410 (-)
kcnd1 kcnd1,LOC107584898,LOC107601760 coding upstream 464361 37853780 ~ 37958375 (-)
G57201 NA non-coding downstream 71962 37308669 ~ 37309114 (-)
G57199 NA non-coding downstream 76832 37303870 ~ 37304244 (-)
G57178 NA non-coding downstream 127277 37249860 ~ 37253799 (-)
G57176 pqlc2 non-coding downstream 135695 37240655 ~ 37245381 (-)
G57166 trim33 non-coding downstream 143409 37230198 ~ 37237667 (-)
G57225 NA non-coding upstream 56315 37445734 ~ 37446043 (-)
G57272 NA non-coding upstream 254781 37644200 ~ 37675261 (-)
G57351 NA non-coding upstream 456640 37846059 ~ 37846284 (-)
G57364 NA non-coding upstream 671805 38061224 ~ 38126192 (-)
G57366 NA non-coding upstream 708177 38097596 ~ 38120711 (-)
LOC103043112 LOC108438563,LOC108265696,LOC107725303,LOC107653398,LOC107598961,LOC107674288,LOC107734522,LOC107570980,LOC105889772 other downstream 54340 37302047 ~ 37326736 (-)
brpf3 brpf3,LOC108265695 other downstream 81469 37281113 ~ 37299607 (-)
LOC111192678 phf19 other downstream 588632 36785308 ~ 36792444 (-)
LOC107196826 LOC108438352,LOC106580127,LOC108265896,LOC106585786 other downstream 634442 36680166 ~ 36746634 (-)
G57014 NA other downstream 977778 36402850 ~ 36403298 (-)
LOC111192682 NA other upstream 871698 38261117 ~ 38305466 (-)
LOC103030299 fkbp1aa,fkb1b,fkbp1a,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 2132125 39521544 ~ 39562921 (-)
G57727 kdm5c,LOC107550909,LOC107747206,LOC107570512 other upstream 2728370 40117789 ~ 40119095 (-)
LOC103037008 LOC108442081,LOC105022382,LOC106567250 other upstream 2775981 40165400 ~ 40179141 (-)
tprg1l tprg1l,LOC107710788,LOC107678419,LOC107698845,LOC106513028 other upstream 3359322 40748741 ~ 40756014 (-)

Expression


Co-expression Network