G57227


Basic Information

Item Value
gene id G57227
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 37477232 ~ 37548787 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU77198
aaagttttaagagttcagaaatcaatatttgactccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgcaaaaattcaagcagttcagtttggtggtttgatggattgttttttaatttgccaaaatcaaggaaaaaacacatttttaagtgatcttttacttttttttccccagagctgtatgtagaaGTATAAAAAATTCTAAGATTCACTTTTTTATATGAGCGCACGGCCAAACAACAGTAAGTACACCTCTAGCCTTAAACATTTGTGCAACATAATATTGGGGTTCATACAAAGCTAGGCCACCTTTAGAAAGTAGGACAGGATATTGTCCTTGATTGTTTAAATTCACAATTCACAGTCTTTTATAAGCGCAGAGACTCTTCATTATGAGCTAATGACTTGTACCGCTGCATCTCATCATCAGAAATGTTCCTGAATAGCTGCTTTAGTACCGCAGAACTGCAGGAACAGCCATGTTGACCAATCATCAGCTTTCCTTTTTCAGCAGGAACAGGCGGTTCGGTCAACAGCGCACATGGAAACGTCGTCTATGTATGTAAAACTCATTGGATAACATTCAACGGTTACAATTCAAATggtcttaaaaaaattactactatttaaaaaaaaaaaaagcatcataaAGATCATAAAGTGTCTGAAAATTGGCCACGCCTCTTTCTCCTTTATCGCTTTTGATTAGTTACGATAAAATTTTCACATAAAAATCAATCCTTGGAAGAGTTTCTCAGTGGTTTTTCCTCCGCTGAAAAAATGATCTACTGAAGACTTTCGCCGAAGTTCGATATTCGTTCTCTAGAAACGCTGCTTCCTGTTGAGGATCTCGTTGAAGAATCATTCTTTTCCTTCCAGTCCTGCAGCCTGAAGACCCTCCTGAGGTTCAGCCCTCAGTCAGATTAAAGTAACAGCAGATTAAAGAAATGGCTCCAGACTTGAGGGCGAGCACGAGGGTCACTGTAGGTCACTGTGGGTCACTGTTGAGTTCATCAGTGATGGAGGAAGTCCTTATCTTTTGTAGTGTCTGGGAGCGTCCGCAAACATGTACTTGAGTCTGTAGGCTTCAGCCAGGAGTAAACCCACCTCCTCGTTGCCCCAGTGTATTGTGGGTAGGTTCT
>TU77199
ttcttcatgcatcttggcatcatgttctcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgcaaaaattaattcaagcagttcagtttggtggtttgatggattgttttttaatttgccaaaatcaaggaaaaaacacatttttaagtgatcttttacttttttttccccagagctgtatgtagaaGTATAAAAAATTCTAAGATTCACTTTTTTATATGAGCGCACGGCCAAACAACAGTAAGTACACCTCTAGCCTTAAACATTTGTGCAACATAATATTGGGGTTCATACAAAGCTAGGCCACCTTTAGAAAGTAGGACAGGATATTGTCCTTGATTGTTTAAATTCACAATTCACAGTCTTTTATAAGCGCAGAGACTCTTCATTATGAGCTAATGACTTGTACCGCTGCATCTCATCATCAGAAATGTTCCTGAATAGCTGCTTTAGTACCGCAGAACTGCAGGAACAGCCATGTTGACCAATCATCAGCTTTCCTTTTTCAGCAGGAACAGGCGGTTCGGTCAACAGCGCACATGGAAACGTCGTCTATGTATGTAAAACTCATTGGATAACATTCAACGGTTACAATTCAAATggtcttaaaaaaattactactatttaaaaaaaaaaaaagcatcataaAGATCATAAAGTGTCTGAAAATTGGCCACGCCTCTTTCTCCTTTATCGCTTTTGATTAGTTACGATAAAATTTTCACATAAAAATCAATCCTTGGAAGAGTTTCTCAGTGGTTTTTCCTCCGCTGAAAAAATGATCTACTGAAGACTTTCGCCGAAGTTCGATATTCGTTCTCTAGAAACGCTGCTTCCTGTTGAGGATCTCGTTGAAGAATCATTCTTTTCCTTCCAGTCCTGCAGCCTGAAGACCCTCCTGAGGTTCAGCCCTCAGTCAGATTAAAGTAACAGCAGATTAAAGAAATGGCTCCAGACTTGAGGGCGAGCACGAGGGTCACTGTAGGTCACTGTGGGTCACTGTTGAGTTCATCAGTGATGGAGGAAGTCCTTATCTTTTGTAGTGTCTGGGAGCGTCCGCAAACATGTACTTGAGTCTGTAGGCTTCAGCCAGGAGTAAACCCACCTCCTCGTTGCCCCAGTGTATTGTGGGTAGGTTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU77198 False 1162 lncRNA 0.40 2 37547561 37548787
TU77199 True 1163 lncRNA 0.40 2 37477232 37548787

Neighbor

gene id symbol gene type direction distance location
LOC103043413 LOC108438559 coding upstream 198842 37254838 ~ 37278390 (+)
pqlc2 pqlc2 coding upstream 226262 37240674 ~ 37250970 (+)
trim33 trim33,LOC107734526,LOC107725313 coding upstream 239573 37191998 ~ 37237659 (+)
bcas2 bcas2,LOC107674303,LOC107734517,LOC107664982,LOC107725297 coding upstream 288516 37184419 ~ 37188716 (+)
LOC103044036 dennd2c,LOC108438557,LOC107566809,LOC107725285 coding upstream 294709 37151249 ~ 37182523 (+)
LOC103038870 LOC108438573,LOC107653415 coding downstream 244536 37793323 ~ 37800678 (+)
LOC103037590 NA coding downstream 548767 38097554 ~ 38137323 (+)
LOC111192680 plxna3,LOC108410726,LOC106572068 coding downstream 626184 38174971 ~ 38205601 (+)
hnrnpk hnrnpk,LOC105890375,LOC107730329,LOC101472815 coding downstream 1708738 39257525 ~ 39267633 (+)
c6h9orf64 cunh9orf64,c5h9orf64,zgc:136564,LOC107757431,LOC107664574,LOC107553132,LOC107752563 coding downstream 1720435 39269222 ~ 39276715 (+)
G57212 NA non-coding upstream 2454 37473996 ~ 37474778 (+)
G57209 NA non-coding upstream 85866 37388089 ~ 37391366 (+)
G57088 NA non-coding upstream 244196 37230990 ~ 37233036 (+)
G56859 NA non-coding upstream 601885 36807703 ~ 36875347 (+)
G57239 NA non-coding downstream 59729 37608516 ~ 37608801 (+)
G57246 NA non-coding downstream 95401 37644188 ~ 37675261 (+)
G57292 NA non-coding downstream 302414 37851201 ~ 37935481 (+)
G57300 NA non-coding downstream 377597 37926384 ~ 38145181 (+)
G57310 NA non-coding downstream 512437 38061224 ~ 38126325 (+)
G57066 NA other upstream 471434 37005273 ~ 37005798 (+)
G56701 pola2,LOC107710902,LOC107657899 other upstream 1512722 35956104 ~ 35964510 (+)
G56504 NA other upstream 2018355 35420718 ~ 35458877 (+)
LOC103032256 dynll1,LOC103397138,LOC107554284,LOC107559583,LOC100698873 other upstream 2192961 35276079 ~ 35284271 (+)
ikbkb ikbkb,vdac3,LOC107560056,LOC107671013,LOC107754399 other upstream 2204704 35226485 ~ 35272528 (+)
agtpbp1 agtpbp1 other downstream 1560457 39109244 ~ 39153476 (+)
frmd3 frmd3,LOC107678471 other downstream 1743284 39292071 ~ 39370585 (+)
LOC103039219 iqsec2,LOC107747221,LOC107683900,LOC107702804,LOC108265842 other downstream 2418303 39967090 ~ 40090271 (+)
G57664 NA other downstream 2495866 40044653 ~ 40046467 (+)
G57856 tp73 other downstream 3126253 40675040 ~ 40680555 (+)

Expression


Co-expression Network