G57272


Basic Information

Item Value
gene id G57272
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 37644200 ~ 37675261 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU77248
tacaggggttggacaatgaaactgaaacacctggttttagagcacaataattgattgtggtgacggacagttctggtggaaacaggagagttgaggtgcacattgaattctgcgtgatttgatcagccgtggttttattgttttttggatacaatccgggttagcacccgaacatccctttcagacagcttcctctcacagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU77248 True 202 lncRNA 0.45 2 37644200 37675261

Neighbor

gene id symbol gene type direction distance location
LOC103031835 pim1,LOC103031835,LOC108438567,LOC107584899,LOC107598956,LOC107734527,LOC108265925,LOC107674355,LOC107725309 coding downstream 8745 37631057 ~ 37635455 (-)
tbc1d22b tbc1d22b,LOC108438566,LOC107653399,LOC107674367,LOC107734531 coding downstream 44902 37547759 ~ 37599298 (-)
LOC111192681 si:ch211-240g9.1,LOC108438565,LOC108264952,LOC107598959,LOC107653411,LOC105925911,LOC100700110 coding downstream 168188 37390442 ~ 37476012 (-)
slc2a6 slc2a6,LOC107599026 coding downstream 582502 37050720 ~ 37061698 (-)
LOC107197187 NA coding downstream 595584 37043801 ~ 37048616 (-)
LOC103047788 NA coding upstream 133287 37808548 ~ 37842410 (-)
kcnd1 kcnd1,LOC107584898,LOC107601760 coding upstream 178519 37853780 ~ 37958375 (-)
gripap1 gripap1,LOC107743091,LOC107653413,LOC107734529 coding upstream 333293 38008554 ~ 38086312 (-)
LOC103047168 NA coding upstream 412326 38087587 ~ 38095443 (-)
LOC103022934 pdlim2,LOC103022934,LOC107724143,LOC107740981,LOC107702839,LOC108265771 coding upstream 648724 38323985 ~ 38408228 (-)
G57225 NA non-coding downstream 198157 37445734 ~ 37446043 (-)
G57218 NA non-coding downstream 254781 37381076 ~ 37389419 (-)
G57201 NA non-coding downstream 335086 37308669 ~ 37309114 (-)
G57199 NA non-coding downstream 339956 37303870 ~ 37304244 (-)
G57178 NA non-coding downstream 390401 37249860 ~ 37253799 (-)
G57351 NA non-coding upstream 170798 37846059 ~ 37846284 (-)
G57364 NA non-coding upstream 385963 38061224 ~ 38126192 (-)
G57366 NA non-coding upstream 422335 38097596 ~ 38120711 (-)
G57368 NA non-coding upstream 456220 38131481 ~ 38136001 (-)
G57374 NA non-coding upstream 577386 38252647 ~ 38252920 (-)
LOC103043112 LOC108438563,LOC108265696,LOC107725303,LOC107653398,LOC107598961,LOC107674288,LOC107734522,LOC107570980,LOC105889772 other downstream 317464 37302047 ~ 37326736 (-)
brpf3 brpf3,LOC108265695 other downstream 344593 37281113 ~ 37299607 (-)
LOC111192678 phf19 other downstream 851756 36785308 ~ 36792444 (-)
LOC107196826 LOC108438352,LOC106580127,LOC108265896,LOC106585786 other downstream 897566 36680166 ~ 36746634 (-)
G57014 NA other downstream 1240902 36402850 ~ 36403298 (-)
LOC111192682 NA other upstream 585856 38261117 ~ 38305466 (-)
LOC103030299 fkbp1aa,fkb1b,fkbp1a,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 1846283 39521544 ~ 39562921 (-)
G57727 kdm5c,LOC107550909,LOC107747206,LOC107570512 other upstream 2442528 40117789 ~ 40119095 (-)
LOC103037008 LOC108442081,LOC105022382,LOC106567250 other upstream 2490139 40165400 ~ 40179141 (-)
tprg1l tprg1l,LOC107710788,LOC107678419,LOC107698845,LOC106513028 other upstream 3073480 40748741 ~ 40756014 (-)

Expression


Co-expression Network