G57310


Basic Information

Item Value
gene id G57310
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 38061224 ~ 38126325 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU77292
agttggggcgccgagtggtccagcggtctaaagcgctgccactatgagcaggaggtcgccggttcgaaccccagctcatgcagctttgccatcaagctgccggcgctcagagggagcaaaattggccctgctccctctgggtgggtagatggcgctctttccccacatcactcctatggtgatgtctgcagcacggggcgtctgtgagctgatgtaccggagccgagccgctgcgctttcctccaagcgcgctggctgctcggcaatgctgaatcggcagcagctcgaaaagaagcggtggctgacttcacatgtatcggaggaagcatgtgctagtcttcaccctcctggtgttagggcatcactagtaatagggttagtcctaattagtgggttgggtaattggccgtgtaaattggggagaaaatgggaaaaaaaaaa
>TU77293
agttggggcgccgagtggtccagcggtctaaagcgctgccactatgagcaggaggtcgccggttcgaaccccagctcatgcagctttgccatcaagctgccggcgctcagagggagcaaaattggccctgctccctctgggtgggtagatggcgctctttccccacatcactcctatggtgatgtctgcagcacggggcgtctgtgagctgatgtaccggagccgagccgctgcgctttcctccaagcgcgctggctgctcggcaatgctgaatcggcagcagctcgaaaagaagcggtggctgatttcacatgtatcggaggaagcatgtgttagtcttcaccctcctggtgtgttgaggtatcactagtgatagggggagtcctaatgaatgggtaattggccgtgtaaattggggagaaaatgggaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU77292 True 441 lncRNA 0.56 2 38061224 38126325
TU77293 False 438 lncRNA 0.56 2 38061224 38126325

Neighbor

gene id symbol gene type direction distance location
LOC103038870 LOC108438573,LOC107653415 coding upstream 260546 37793323 ~ 37800678 (+)
LOC103043413 LOC108438559 coding upstream 782834 37254838 ~ 37278390 (+)
pqlc2 pqlc2 coding upstream 810254 37240674 ~ 37250970 (+)
trim33 trim33,LOC107734526,LOC107725313 coding upstream 823565 37191998 ~ 37237659 (+)
bcas2 bcas2,LOC107674303,LOC107734517,LOC107664982,LOC107725297 coding upstream 872508 37184419 ~ 37188716 (+)
LOC111192680 plxna3,LOC108410726,LOC106572068 coding downstream 48646 38174971 ~ 38205601 (+)
hnrnpk hnrnpk,LOC105890375,LOC107730329,LOC101472815 coding downstream 1131200 39257525 ~ 39267633 (+)
c6h9orf64 cunh9orf64,c5h9orf64,zgc:136564,LOC107757431,LOC107664574,LOC107553132,LOC107752563 coding downstream 1142897 39269222 ~ 39276715 (+)
gkap1 gkap1 coding downstream 1152102 39278427 ~ 39287807 (+)
LOC103031561 LOC108426644,LOC107570009,LOC107664480 coding downstream 1280340 39406665 ~ 39487936 (+)
G57292 NA non-coding upstream 125743 37851201 ~ 37935481 (+)
G57246 NA non-coding upstream 385963 37644188 ~ 37675261 (+)
G57239 NA non-coding upstream 452423 37608516 ~ 37608801 (+)
G57227 NA non-coding upstream 512437 37477232 ~ 37548787 (+)
G57229 NA non-coding upstream 514965 37486371 ~ 37546259 (+)
G57319 NA non-coding downstream 81131 38207456 ~ 38209045 (+)
G57326 NA non-coding downstream 87930 38214255 ~ 38216252 (+)
G57334 NA non-coding downstream 107372 38233697 ~ 38234701 (+)
G57343 NA non-coding downstream 122944 38249269 ~ 38249888 (+)
G57397 NA non-coding downstream 196865 38323190 ~ 38323437 (+)
G57066 NA other upstream 1055426 37005273 ~ 37005798 (+)
G56701 pola2,LOC107710902,LOC107657899 other upstream 2096714 35956104 ~ 35964510 (+)
G56504 NA other upstream 2602347 35420718 ~ 35458877 (+)
LOC103032256 dynll1,LOC103397138,LOC107554284,LOC107559583,LOC100698873 other upstream 2776953 35276079 ~ 35284271 (+)
ikbkb ikbkb,vdac3,LOC107560056,LOC107671013,LOC107754399 other upstream 2788696 35226485 ~ 35272528 (+)
agtpbp1 agtpbp1 other downstream 982919 39109244 ~ 39153476 (+)
frmd3 frmd3,LOC107678471 other downstream 1165746 39292071 ~ 39370585 (+)
LOC103039219 iqsec2,LOC107747221,LOC107683900,LOC107702804,LOC108265842 other downstream 1840765 39967090 ~ 40090271 (+)
G57664 NA other downstream 1918328 40044653 ~ 40046467 (+)
G57856 tp73 other downstream 2548715 40675040 ~ 40680555 (+)

Expression


Co-expression Network