G57334


Basic Information

Item Value
gene id G57334
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 38233697 ~ 38234701 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU77323
CCGAGCTGTGTGAGATTAAGCTGAAGCACAGCGAGCTCATTGTGAGTTGGGCTGTTCGGGACGCAGCACTTTGTGATGTTAAGAAAACACAAGTTCCTGGACCGCTTTACTCGTACACACTCTTTGTAGCGTTATCGGATTGGCCGGGGAATTTCTCAGAGTAATGCTCTGAATATgacagttacacacagagcaCTTTGTGTAAACACGGACTGTCATCCAGCTCCGGAAAAAAGTATTTCGTCACTGTCACACCCGGACTCTccgttttattctgttttttattcactttttattttctttataccATTCTGAATGTACTAGCTGCCCCCTTACATTTTACACCGTGTATCCATTACTAAATTCTGAGTTAACCTGTAGAAATTCAGGCTTTTCTATctattctaattttctttttttcatccaTTGCTTTTCATGGCTTTGTGAGCTTTGATTGGGATGTTTGGGTAATTTTATGGCATTTTAGTCCTTGAAAAAGTTGGGTTTCTTTTGGTTGTTGGGCCAATTTGAAACTTGCCTGCTGTTAAAAACCATTGAACCAAGTTAGCAAACTCCAGTAAGCACCAGCAAGCTTCAACAAACCAGTTAATTAAATCAAACCCCAGCAAACACCAGCAAAAACCCAACATACACCAACAAAACTTAACACCTGCAAACACCAACGCCCCCTATCAAGAACCAACTACCCATCAAACCAACAAAGAACAGCGAATCCCAAAATTCccacaaattaacaaacacCAGCATACCTCAACAAAGACTAACAAACCAACAAATACGAACAAAACTCAACAAATTGCCAAACACCAGCATACCTTAGCAACCCCCAACAAAACCCAACAAACACCAGTATACACCAACAAGCCAACAAAACCCACAAACACATCAACAAACACCAGCaaactccaacaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU77323 True 935 lncRNA 0.41 2 38233697 38234701

Neighbor

gene id symbol gene type direction distance location
LOC111192680 plxna3,LOC108410726,LOC106572068 coding upstream 28096 38174971 ~ 38205601 (+)
LOC103037590 NA coding upstream 96374 38097554 ~ 38137323 (+)
LOC103038870 LOC108438573,LOC107653415 coding upstream 433019 37793323 ~ 37800678 (+)
LOC103043413 LOC108438559 coding upstream 955307 37254838 ~ 37278390 (+)
pqlc2 pqlc2 coding upstream 982727 37240674 ~ 37250970 (+)
hnrnpk hnrnpk,LOC105890375,LOC107730329,LOC101472815 coding downstream 1022824 39257525 ~ 39267633 (+)
c6h9orf64 cunh9orf64,c5h9orf64,zgc:136564,LOC107757431,LOC107664574,LOC107553132,LOC107752563 coding downstream 1034521 39269222 ~ 39276715 (+)
gkap1 gkap1 coding downstream 1043726 39278427 ~ 39287807 (+)
LOC103031561 LOC108426644,LOC107570009,LOC107664480 coding downstream 1171964 39406665 ~ 39487936 (+)
LOC103032512 NA coding downstream 1289914 39524615 ~ 39528505 (+)
G57326 NA non-coding upstream 17445 38214255 ~ 38216252 (+)
G57319 NA non-coding upstream 24652 38207456 ~ 38209045 (+)
G57300 NA non-coding upstream 88516 37926384 ~ 38145181 (+)
G57310 NA non-coding upstream 107372 38061224 ~ 38126325 (+)
G57292 NA non-coding upstream 298216 37851201 ~ 37935481 (+)
G57343 NA non-coding downstream 14568 38249269 ~ 38249888 (+)
G57397 NA non-coding downstream 88489 38323190 ~ 38323437 (+)
G57427 NA non-coding downstream 860636 39095337 ~ 39097423 (+)
G57457 NA non-coding downstream 1028470 39263171 ~ 39263975 (+)
G57473 NA non-coding downstream 1139299 39374000 ~ 39377061 (+)
G57066 NA other upstream 1227899 37005273 ~ 37005798 (+)
G56701 pola2,LOC107710902,LOC107657899 other upstream 2269187 35956104 ~ 35964510 (+)
G56504 NA other upstream 2774820 35420718 ~ 35458877 (+)
LOC103032256 dynll1,LOC103397138,LOC107554284,LOC107559583,LOC100698873 other upstream 2949426 35276079 ~ 35284271 (+)
ikbkb ikbkb,vdac3,LOC107560056,LOC107671013,LOC107754399 other upstream 2961169 35226485 ~ 35272528 (+)
agtpbp1 agtpbp1 other downstream 874543 39109244 ~ 39153476 (+)
frmd3 frmd3,LOC107678471 other downstream 1057370 39292071 ~ 39370585 (+)
LOC103039219 iqsec2,LOC107747221,LOC107683900,LOC107702804,LOC108265842 other downstream 1732389 39967090 ~ 40090271 (+)
G57664 NA other downstream 1809952 40044653 ~ 40046467 (+)
G57856 tp73 other downstream 2440339 40675040 ~ 40680555 (+)

Expression


Co-expression Network