G57368


Basic Information

Item Value
gene id G57368
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 38131481 ~ 38136001 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU77366
attttttagttTGAGTTGAGGCAAATTTTTACCCATGCCGCCTGGAGCGGAGTAGCTATTGGTGTTGGAGACGTTCGAGATGGTGGAGACGTTAGAGACGTATTCATAATCATCATCTGTGGAGCTGTGGCTGTCAgctgaggacacacacacacaatacacacacacacacaatatacaatacacaaCAGGTTCAGTACACCTtataacaggggtgtccaaactacggcccgcgggccatttagaggtattttagaaatagaatgaaagttcgcccgctgttaagcaggtttttataatgtgagattcaaagtttgaacgctaggtgtcaaaaacggggcaaagagtctaaaagcggagagagtgcgcagttctagcacagaaaaacgggccaaagagtctaaaagcggagagagtgcgcatttctagcgcagaaaaacgggccaaagagtctaaaagcggagagagtgcgcatttctagcacagaaaaacggcccaaagagtctaaaagcggagagagtgcgcatttctagcgcagaaaaacgggccaaagagtctaaaagcggagagagtgcgcatttctagcgcagaaaaacagggcaaagagtctaaaagtggagagagtgccaaagagtctaaaagttgccgtaattaaggagtttaatattacaaGGTTATTCATTGGGATGCTTTGAGTACACCAATGGTACCCCCAACAGTTTGGGAACCACTTTTTTACTGCACATGGCAGGAGTTTCTGATAAAAAGGCCAGAGACTAAATAGTTCTTCTAATAAACTGGCAACTGGTTGTTCTTTTTTCTCGTCAGCTCTGTTTGCCAAAGAAGAAGCAGCTTTAAACTTCCTTCCACAGGAAGACGAAGTGTAAAATACGAGCGAACTGTGAAAACGGCGAGAAGAGCTGCAGTCTGAAGAACGCAGCAAACTCACAGCAGGAACACACTGTTATCATGGCAATTACCCCCACCGGTATATGAGACTGAGTGGAGCTGAGCTCCTTTATGAAATATCCTTCATTTGTCAGATAAATTGTGAATATAAATGGGGAAACAATATGCACATATGAAATTGAGTGCAGATGAGATTGTTGATAAAGCCCTGCATCTCAGATTGACTTTATGAACTGTATGAATATAGACCATCCGTCTGACAGGTTGCGGCTGAGCCGGTGGGTGGCTGAGGAAACTGGATGAGAATTAAATACAGCTTGTCAAACAGTACTTAGATAATATGCTGGAGAAATgagagatctgttcttaatgaAATGGTTTTAAAGCTCTGATATGGCCAGATGTAATCGAAGCTTTAAATCTTTAcaatccattacaatggacatcatgtattttctatatttctgaatGTTTTGCTGTATAcaaacactatttgagagctgttatccatcagaatagaccatgaaccataATTTAGCCAATGAAccagtttataaaccaatgaaacaatagcttggccccgcccacttgAGAAAAGCTGGAAAAACAGTAGCACTAAAGCCATCGAGTAatttttacaaagaaaaaaaatactttaaaagggCATGGAGAACTCATCTAGGAGGTcccaaaataaaacagttttaaagctCCAATAAGAAATCGTTTGCAGCTATTGGCCAGATGTATTTGAAGTTTTAAAGAAGAAATTGGGGTAAAATCAAATTACACATGATGTATGATCAGCTTACACATGTTTAGTATCTTTGTTAGCGAGTAAAGTTAAGTTGCTTTGTTAGATTTTGAACAAGAAATGCTAAACTAACATGGCTAACAAACACTGAACTTATCACCAGATGAGTTACATATTAGTTaattgctatatagattttatagtagaatattataaaagtcttcttttctgtgctttACAGACAGAACAAAGCATTCTTACAATTGTTTTCTATCACTATCACCgaagataattcaggtctgaaagggttaaagaagAAATTTGGGTAAAAATCAAGTTCACATCATTTAAGATTAACTTAAATGACATCATGAGTGACTGGCCTaccgaagaaaaaaaaaaaaaattactttaaaagggcatggagaactcatccaggaggtcccaaaataaaatggttttaaaGCTCCAATAAGAAATCGTTTGCAGCTATTGGACagatttattaaagttttaaaggagaaattgGGGGAAATTCAGCTCACACGTTTAGCGTATGTAATCTTTTTAGCGAGTAAAGTTAAGATGCTTTGTTAGTTTTTGAACAAGAAATACTAAACTAACATGGCTAACGAACATTGAACTTATTACCAATCAAAATCTTGCATCAAACTTAAAAAGTATAAAGAATAAGGGTGGAAATCTTCAGGCatttagagtaaaataaataagcacaCATCAAATATCAAcagccacaaccaggcctgattactgccagacacTATGAGTGACTGGCctaccgaaaaaaaaaaaattaccccaaaagggcatggagaactcatccaagaggtcccCAAAAAAaccccagaacaacatctaaaagATCCATGGAAGTATCTATGTATATACAAAAGCCCCGTCTCACATCATGATGATGCACAGGACTTAAAGGAAAATATTCTGTGGGCTggcgagacaaaagtggaacatataattttagaaaaaacatCATATGGAAAATCAAACATGGTGGGGCTTGTAATATAATAAGCACACATCAAATATCAAATGCAGTATGCCTGGATGACTGGTGTGTACATCATATTAATCTGATTTTCACCAAAATAGTTCTTTAAAAGTACAAAACAAGGAAGTGGACATACCTGTGAGTCTCTTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU77366 True 2841 lncRNA 0.38 2 38131481 38136001

Neighbor

gene id symbol gene type direction distance location
LOC103047168 NA coding downstream 36038 38087587 ~ 38095443 (-)
gripap1 gripap1,LOC107743091,LOC107653413,LOC107734529 coding downstream 45169 38008554 ~ 38086312 (-)
kcnd1 kcnd1,LOC107584898,LOC107601760 coding downstream 173106 37853780 ~ 37958375 (-)
LOC103047788 NA coding downstream 289071 37808548 ~ 37842410 (-)
LOC103031835 pim1,LOC103031835,LOC108438567,LOC107584899,LOC107598956,LOC107734527,LOC108265925,LOC107674355,LOC107725309 coding downstream 496026 37631057 ~ 37635455 (-)
LOC103022934 pdlim2,LOC103022934,LOC107724143,LOC107740981,LOC107702839,LOC108265771 coding upstream 187984 38323985 ~ 38408228 (-)
LOC103028719 sorbs3,LOC108265711 coding upstream 274801 38410802 ~ 38471423 (-)
naa35 naa35 coding upstream 957355 39093356 ~ 39110114 (-)
ntrk2 ntrk2,ntrk2a,LOC107752549,LOC107678451,LOC107757434 coding upstream 1031793 39167794 ~ 39248420 (-)
rmi1 NA coding upstream 1115720 39251721 ~ 39257435 (-)
G57364 NA non-coding downstream 5289 38061224 ~ 38126192 (-)
G57366 NA non-coding downstream 10770 38097596 ~ 38120711 (-)
G57351 NA non-coding downstream 285197 37846059 ~ 37846284 (-)
G57272 NA non-coding downstream 456220 37644200 ~ 37675261 (-)
G57225 NA non-coding downstream 685438 37445734 ~ 37446043 (-)
G57374 NA non-coding upstream 116646 38252647 ~ 38252920 (-)
G57452 agtpbp1,LOC106580090 non-coding upstream 1007115 39143116 ~ 39150821 (-)
G57450 NA non-coding upstream 1015917 39151918 ~ 39153351 (-)
G57447 NA non-coding upstream 1088940 39224941 ~ 39225592 (-)
G57560 frmd3 non-coding upstream 1227084 39363085 ~ 39367709 (-)
LOC103043112 LOC108438563,LOC108265696,LOC107725303,LOC107653398,LOC107598961,LOC107674288,LOC107734522,LOC107570980,LOC105889772 other downstream 804745 37302047 ~ 37326736 (-)
brpf3 brpf3,LOC108265695 other downstream 831874 37281113 ~ 37299607 (-)
LOC111192678 phf19 other downstream 1339037 36785308 ~ 36792444 (-)
LOC107196826 LOC108438352,LOC106580127,LOC108265896,LOC106585786 other downstream 1384847 36680166 ~ 36746634 (-)
G57014 NA other downstream 1728183 36402850 ~ 36403298 (-)
LOC111192682 NA other upstream 125116 38261117 ~ 38305466 (-)
LOC103030299 fkbp1aa,fkb1b,fkbp1a,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 1385543 39521544 ~ 39562921 (-)
G57727 kdm5c,LOC107550909,LOC107747206,LOC107570512 other upstream 1981788 40117789 ~ 40119095 (-)
LOC103037008 LOC108442081,LOC105022382,LOC106567250 other upstream 2029399 40165400 ~ 40179141 (-)
tprg1l tprg1l,LOC107710788,LOC107678419,LOC107698845,LOC106513028 other upstream 2612740 40748741 ~ 40756014 (-)

Expression


Co-expression Network