LOC111192682


Basic Information

Item Value
gene id LOC111192682
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 38261117 ~ 38305466 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU77386
AGCGGACGGAGCGCGCGAGGGCTAAGCTGAGGGTTTCTCACTTACTCTGAACTTTTCTGCTCACTTTTAAAGCGCGTCAGGAGTTTTTAAGCTCGGGTAATTCTCGGCTGCGGATTGGCTGAGAGGGAAAACGCACGGAAATGCACTTTTTCACGATTTTGGGAGTTTAAACGTGTGTACAGCTCGAGCTCGAGCTCGTGGACGTGGTGGACGTTGTGGAGCGGGACAGTCAGTGATGGAGAGGCACGCGAAGTGAACCCCTGAAGATTggagacattattattattaatatcaattTTAACCGCTGAAGTTGTTATTATAAAGTCTGCGCGCGCTCCACGATAGCTCCGCTGCGCTCCGTGCTTGCGCCCTGATGTCATGGGGTGATCGGACGGACCGGCTGCGTCTCGCGCTCTAAAGGTTTGTGATGCCGCGCGTGCCAGGGCTTGACTGCCAGCGGCTGCAACTGCGCGGATGAGCGCGCGAAGGGCTCCGGGAGCCGCAGGAGAGTGAGCTGCACCGGGAGGGAACTGACTGAGCCGCCCGGAGCGAGCGCGCTGCCCAACAAGACCTCCAGCTTGAACCTGAGTAACAACCGCATCCGTGTGCTAAGAAACGGCTCCTTCGCCGGCTTGTACTCGCTGGAAAAACTGTAAGTAATTACAGCCATTTTCATCCTTGTCGCTATCCTTATCCTCATCGCCATCACACGGCTTTACCTGAGCActtctttgatctttctttcCCATGGATATTAGCTATGAGCTC
>XM_022670621.1
ggagcgctgctgctgctgctgctgcggggaGTGAGGAGTGAGGAGCACGGAGGAGTCTCCAGAAGAGCCCAGCgcagagagagagctgctgctgctgccgccgctgcaaCAGCTACAGTTACTGTCAGTAACACTTAGTTACACTCAGCTCTAGCGGACGGAGCGCGCGAGGGCTAAGCTGAGGGTTTCTCACTTACTCTGAACTTTTCTGCTCACTTTTAAAGCGCGTCAGGAGTTTTTAAGCTCGGGTAATTCTCGGCTGCGGATTGGCTGAGAGGGAAAACGCACGGAAATGCACTTTTTCACGATTTTGGGAGTTTAAACGTGTGTACAGCTCGAGCTCGAGCTCGTGGACGTGGTGGACGTTGTGGAGCGGGACAGTCAGTGATGGAGAGGCACGCGAAGTGAACCCCTGAAGATTggagacattattattattaatatcaattTTAACCGCTGAAGTTGTTATTATAAAGTCTGCGCGCGCTCCACGATAGCTCCGCTGCGCTCCGTGCTTGCGCCCTGATGTCATGGGGTGATCGGACGGACCGGCTGCGTCTCGCGCTCTAAAGGTTTGTGATGCCGTCCCGGGCCCGCGTGCTCCTCGCGCTGCTCCCCGCGCTGCTCCTCGCGCTCGCGCTCGTGCCGCTGGCCCGCGCGTGCCAGGGCTTGACTGCCAGCGGCTGCAACTGCGCGGATGAGCGCGCGAAGGGCTCCGGGAGCCGCAGGAGAGTGAGCTGCACCGGGAGGGAACTGACTGAGCCGCCCGGAGCGAGCGCGCTGCCCAACAAGACCTCCAGCTTGAACCTGAGTAACAACCGCATCCGTGTGCTAAGAAACGGCTCCTTCGCCGGCTTGTACTCGCTGGAAAAACTGTAAGTAATTACAGCCATTTTCATCCTTGTCGCTATCCTTATCCTCATCGCCATCACACGGCTTTACCTGAGCActtctttgatctttctttcCCATGGATATTAGCTATGAGCTCAGGATCGTAACACACACACGGCATGATCTTCTGGTGGACAGATAGCCCACAGTGCTGGGAAAAAGCTTCAGAAGCCCTCGAAACAATTACATGTAGAGAAATGCTTTTCCAAGAAGAACGCTGATTCTTAATGGAAACTCTGTAATGTCTGTACAAGCAGGGCTAAAAATATACCTGCATATAagtaaaaacatacatatactTAAACACAATAATTAGGCCTATTAGTGAttgtaaaaaacagtgattgaAGAAAGTCATAGATGCTTTGTTCCATTCCCTTACATTCTATAGATATATGAAGCCAGtgttgtcaaatttgcaacTAGAATCTATAAAGTACAGACCAGAGGCAGAGCTAAACTCATCTATGCATTTGATAAACCCACCCCTTTTTTTTCCAggccaagtcaagtcaagtcaaaaggcttttattgtcattacatttCCTATAAAACCAACacagtgcaacatggaacaTCAATACAATATACAAACTAAAGTACAGTtgatacaaatacaataaatacagcagacatgAGATTAACAGaaaggacagtgcagtaccgatacagTGCATGGAATAGACACTACTTAATGGAATATGAAATTAGCTGATAGGGATACTAACAGTTCCAATCTCTTTgtgttgaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU77386 False 768 lncRNA 0.54 3 38261772 38305314
XM_022670621.1 True 1646 mRNA 0.49 2 38261117 38305466

Neighbor

gene id symbol gene type direction distance location
LOC103047168 NA coding downstream 165674 38087587 ~ 38095443 (-)
gripap1 gripap1,LOC107743091,LOC107653413,LOC107734529 coding downstream 174805 38008554 ~ 38086312 (-)
kcnd1 kcnd1,LOC107584898,LOC107601760 coding downstream 302742 37853780 ~ 37958375 (-)
LOC103047788 NA coding downstream 418707 37808548 ~ 37842410 (-)
LOC103031835 pim1,LOC103031835,LOC108438567,LOC107584899,LOC107598956,LOC107734527,LOC108265925,LOC107674355,LOC107725309 coding downstream 625662 37631057 ~ 37635455 (-)
LOC103022934 pdlim2,LOC103022934,LOC107724143,LOC107740981,LOC107702839,LOC108265771 coding upstream 18519 38323985 ~ 38408228 (-)
LOC103028719 sorbs3,LOC108265711 coding upstream 105336 38410802 ~ 38471423 (-)
naa35 naa35 coding upstream 787890 39093356 ~ 39110114 (-)
ntrk2 ntrk2,ntrk2a,LOC107752549,LOC107678451,LOC107757434 coding upstream 862328 39167794 ~ 39248420 (-)
rmi1 NA coding upstream 946255 39251721 ~ 39257435 (-)
G57374 NA non-coding downstream 8197 38252647 ~ 38252920 (-)
G57368 NA non-coding downstream 125116 38131481 ~ 38136001 (-)
G57364 NA non-coding downstream 134925 38061224 ~ 38126192 (-)
G57366 NA non-coding downstream 140406 38097596 ~ 38120711 (-)
G57351 NA non-coding downstream 414833 37846059 ~ 37846284 (-)
G57452 agtpbp1,LOC106580090 non-coding upstream 837650 39143116 ~ 39150821 (-)
G57450 NA non-coding upstream 846452 39151918 ~ 39153351 (-)
G57447 NA non-coding upstream 919475 39224941 ~ 39225592 (-)
G57560 frmd3 non-coding upstream 1057619 39363085 ~ 39367709 (-)
G57623 NA non-coding upstream 1413965 39719431 ~ 39721612 (-)
LOC103043112 LOC108438563,LOC108265696,LOC107725303,LOC107653398,LOC107598961,LOC107674288,LOC107734522,LOC107570980,LOC105889772 other downstream 934381 37302047 ~ 37326736 (-)
brpf3 brpf3,LOC108265695 other downstream 961510 37281113 ~ 37299607 (-)
LOC111192678 phf19 other downstream 1468673 36785308 ~ 36792444 (-)
LOC107196826 LOC108438352,LOC106580127,LOC108265896,LOC106585786 other downstream 1514483 36680166 ~ 36746634 (-)
G57014 NA other downstream 1857819 36402850 ~ 36403298 (-)
LOC103030299 fkbp1aa,fkb1b,fkbp1a,LOC103030299,LOC107553142,LOC107574256,LOC107752559,LOC107707744 other upstream 1216078 39521544 ~ 39562921 (-)
G57727 kdm5c,LOC107550909,LOC107747206,LOC107570512 other upstream 1812323 40117789 ~ 40119095 (-)
LOC103037008 LOC108442081,LOC105022382,LOC106567250 other upstream 1859934 40165400 ~ 40179141 (-)
tprg1l tprg1l,LOC107710788,LOC107678419,LOC107698845,LOC106513028 other upstream 2443275 40748741 ~ 40756014 (-)
G58022 LOC103032860,LOC108432146 other upstream 3090620 41396086 ~ 41398478 (-)

Expression


Co-expression Network