G57427


Basic Information

Item Value
gene id G57427
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 39095337 ~ 39097423 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU77434
CAGACTGGGATGTGGTACCTTGAACTGGATGTAGTGCACCGGGGGAGGCGTGACCACACTGTTAAAGGGGGCGAAGCGATGCTCGTAGCGAACCTGCTCACTGTCCAGCTCAAACTGAGGCTTCCGCACTTTTCCGTCCATGTCCAGTGCAATCATGGTCTTACATTCCAGCACACATGTTCTGGTAGGCTTGGCTCATTGTGATCTCTTTTCCTAGAGGACGAGCTttttttcttcttcttgctcTTCTTGCTGCTGCGTcctttctgctgctgctcctccaaAATGCGCTCCTCAGCCATCTGAGAGCTGTCTGCTCTGCTCAGAGTGGACATAAGCCATGCATACAGGAATTCTGACAGGTACCTGCATGtgatatacacatacatacacaaacagaaTAACTCCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU77434 True 410 lncRNA 0.50 3 39095337 39097423

Neighbor

gene id symbol gene type direction distance location
LOC111192680 plxna3,LOC108410726,LOC106572068 coding upstream 889736 38174971 ~ 38205601 (+)
LOC103037590 NA coding upstream 958014 38097554 ~ 38137323 (+)
LOC103038870 LOC108438573,LOC107653415 coding upstream 1294659 37793323 ~ 37800678 (+)
LOC103043413 LOC108438559 coding upstream 1816947 37254838 ~ 37278390 (+)
pqlc2 pqlc2 coding upstream 1844367 37240674 ~ 37250970 (+)
hnrnpk hnrnpk,LOC105890375,LOC107730329,LOC101472815 coding downstream 160102 39257525 ~ 39267633 (+)
c6h9orf64 cunh9orf64,c5h9orf64,zgc:136564,LOC107757431,LOC107664574,LOC107553132,LOC107752563 coding downstream 171799 39269222 ~ 39276715 (+)
gkap1 gkap1 coding downstream 181004 39278427 ~ 39287807 (+)
LOC103031561 LOC108426644,LOC107570009,LOC107664480 coding downstream 309242 39406665 ~ 39487936 (+)
LOC103032512 NA coding downstream 427192 39524615 ~ 39528505 (+)
G57397 NA non-coding upstream 771900 38323190 ~ 38323437 (+)
G57343 NA non-coding upstream 845449 38249269 ~ 38249888 (+)
G57334 NA non-coding upstream 860636 38233697 ~ 38234701 (+)
G57326 NA non-coding upstream 879085 38214255 ~ 38216252 (+)
G57319 NA non-coding upstream 886292 38207456 ~ 38209045 (+)
G57457 NA non-coding downstream 165748 39263171 ~ 39263975 (+)
G57473 NA non-coding downstream 276577 39374000 ~ 39377061 (+)
G57498 NA non-coding downstream 399605 39497028 ~ 39497353 (+)
G57505 fkbp1aa,LOC107553142,LOC107574256,LOC103030299,LOC107752559 non-coding downstream 463005 39560428 ~ 39562898 (+)
G57538 NA non-coding downstream 629278 39726701 ~ 39730031 (+)
G57066 NA other upstream 2089539 37005273 ~ 37005798 (+)
G56701 pola2,LOC107710902,LOC107657899 other upstream 3130827 35956104 ~ 35964510 (+)
G56504 NA other upstream 3636460 35420718 ~ 35458877 (+)
LOC103032256 dynll1,LOC103397138,LOC107554284,LOC107559583,LOC100698873 other upstream 3811066 35276079 ~ 35284271 (+)
ikbkb ikbkb,vdac3,LOC107560056,LOC107671013,LOC107754399 other upstream 3822809 35226485 ~ 35272528 (+)
agtpbp1 agtpbp1 other downstream 11821 39109244 ~ 39153476 (+)
frmd3 frmd3,LOC107678471 other downstream 194648 39292071 ~ 39370585 (+)
LOC103039219 iqsec2,LOC107747221,LOC107683900,LOC107702804,LOC108265842 other downstream 869667 39967090 ~ 40090271 (+)
G57664 NA other downstream 947230 40044653 ~ 40046467 (+)
G57856 tp73 other downstream 1577617 40675040 ~ 40680555 (+)

Expression


Co-expression Network