G57473


Basic Information

Item Value
gene id G57473
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 39374000 ~ 39377061 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU77495
TCTCTAGTGCAGcacatttaaacagacaaaaacaatttCACATGCAAATGAACAAATCTACAAAGAAAAGTTTATGGTATCCAGGtgtgtttataaatatgttaatgaGTGTGTCTCagcaagaggaaaaaaaaagatcatacaTTCACATACATTATCACAGTTCATTAACATGCTTTAATATAGAGAACTTACACtgtactacttctactactaacAACAATAATATCAATAACCACACTGTTAtaacaagtttaatatcaatttccattacaataataatagacACATCTTCACTTTCTGTAGCTTCCTGACTGAAACATTAGCTAAACTCACTACCAGACTCTCTACCCTGCAAACTCACGACACATTAGCACACAGATTTAACATGCGTAGTGTCCTGTGTGTCAGACATAATATGAgaatatgaattttaaaatgCTAAAGGATATTATTAAGGCAAAGCATCTCAATCAAAGCTGTTCAGAGGTAGACAGTTTAAACATTCATGCAttgatttacagctctggagaaaaataagagacttaaaaatgacgagtttctttgatttgaccaaattaaaaatctctggaatataatcaagaggaagatggatgatcacaaaccatcaaaccaagttgaactgcttgaatttgcacttggagtggcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgccaagatgcataaaaactgtgactaaaaaccagggttatttaatcaaatattgatttctgaactcttaaaactttatgaatatgaacttgttttctttgcattatttgaggtctgaaagctctgcatcttttttgttatttcagccatttctcattttctgcaaataaatgctc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU77495 True 890 lncRNA 0.33 2 39374000 39377061

Neighbor

gene id symbol gene type direction distance location
gkap1 gkap1 coding upstream 86193 39278427 ~ 39287807 (+)
c6h9orf64 cunh9orf64,c5h9orf64,zgc:136564,LOC107757431,LOC107664574,LOC107553132,LOC107752563 coding upstream 97285 39269222 ~ 39276715 (+)
hnrnpk hnrnpk,LOC105890375,LOC107730329,LOC101472815 coding upstream 106367 39257525 ~ 39267633 (+)
LOC111192680 plxna3,LOC108410726,LOC106572068 coding upstream 1168399 38174971 ~ 38205601 (+)
LOC103037590 NA coding upstream 1236677 38097554 ~ 38137323 (+)
LOC103031561 LOC108426644,LOC107570009,LOC107664480 coding downstream 29604 39406665 ~ 39487936 (+)
LOC103032512 NA coding downstream 147554 39524615 ~ 39528505 (+)
LOC103030832 NA coding downstream 152554 39529615 ~ 39540542 (+)
LOC103029767 LOC108426735,LOC107757078,LOC107703986 coding downstream 164667 39541728 ~ 39560277 (+)
pqbp1 pqbp1 coding downstream 445782 39822843 ~ 39829393 (+)
G57457 NA non-coding upstream 110025 39263171 ~ 39263975 (+)
G57427 NA non-coding upstream 276577 39095337 ~ 39097423 (+)
G57397 NA non-coding upstream 1050563 38323190 ~ 38323437 (+)
G57343 NA non-coding upstream 1124112 38249269 ~ 38249888 (+)
G57334 NA non-coding upstream 1139299 38233697 ~ 38234701 (+)
G57498 NA non-coding downstream 119967 39497028 ~ 39497353 (+)
G57505 fkbp1aa,LOC107553142,LOC107574256,LOC103030299,LOC107752559 non-coding downstream 183367 39560428 ~ 39562898 (+)
G57538 NA non-coding downstream 349640 39726701 ~ 39730031 (+)
G57542 NA non-coding downstream 360499 39737560 ~ 39749700 (+)
G57636 praf2,LOC104927735,LOC106567233,LOC107702816 non-coding downstream 428217 39805278 ~ 39810668 (+)
frmd3 frmd3,LOC107678471 other upstream 3415 39292071 ~ 39370585 (+)
agtpbp1 agtpbp1 other upstream 220524 39109244 ~ 39153476 (+)
G57066 NA other upstream 2368202 37005273 ~ 37005798 (+)
G56701 pola2,LOC107710902,LOC107657899 other upstream 3409490 35956104 ~ 35964510 (+)
G56504 NA other upstream 3915123 35420718 ~ 35458877 (+)
LOC103039219 iqsec2,LOC107747221,LOC107683900,LOC107702804,LOC108265842 other downstream 590029 39967090 ~ 40090271 (+)
G57664 NA other downstream 667592 40044653 ~ 40046467 (+)
G57856 tp73 other downstream 1297979 40675040 ~ 40680555 (+)
LOC103032352 LOC103032352,LOC108432100 other downstream 1997628 41374689 ~ 41377445 (+)
G58025 NA other downstream 2060966 41438027 ~ 41438911 (+)

Expression


Co-expression Network